Mir-279-o33

MirGeneDB ID

Pca-Mir-279-o33

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Penis worm (Priapulus caudatus)

MiRBase ID

Paralogues

Pca-Mir-279-o27 Pca-Mir-279-o28 Pca-Mir-279-o29 Pca-Mir-279-o30 Pca-Mir-279-o31 Pca-Mir-279-o32

Orthologues

Agr-Mir-279 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

P. caudatus

Node of Origin (family)

Protostomia

Genome context
(Priapulus_caudatus_gca000485595v2)

KQ716181.1: 66996-67057 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGAUUGCCGAUGAGUGCGGGAGAAACUAGGCUGAGUGUCAUUCUUGUACAUGCAUAAUGUCAGCCAUGACUAGAUUGAUCACUCAUCCGAGGUUCCUCCGUCGUAUGCCAGCAAUCGAUG

Get precursor sequence

Structure

        10          20        30         40        50        60
GUGGAUUGCCGAUGAGU--    GA   A  A  C      -|  U   U  A    CAUAA 
                   GCGG  GAA CU GG UGAGUG UCA UCU GU CAUG     U
                   UGCC  CUU GA CC ACUCAC AGU AGA CA GUAC     G
GUAGCUAACGACCGUAUGC    UC   G  G  U      U^  U   U  -    CGACU 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of ecdysozoans and how the priapulid Mir-279s relate to the Mir-279s in nematodes or arthropods and thus these multiple paralogues are classified here as orphans pending new data.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Gi	In	To

Star sequence

Pca-Mir-279-o33_5p*

mirBase accession

None

Sequence

0- GGCUGAGUGUCAUUCUUGUACAUG -24

Get sequence

Mature sequence

Pca-Mir-279-o33_3p

mirBase accession

None

Sequence

38- UGACUAGAUUGAUCACUCAUCCGA -62

Get sequence