MirGeneDB 3.0
MirGeneDB ID

Pca-Mir-279-o27

Family name MIR-279 (all species)
Seed GACUAGA
Species Penis worm (Priapulus caudatus)
MiRBase ID
Paralogues Pca-Mir-279-o28  Pca-Mir-279-o29  Pca-Mir-279-o30  Pca-Mir-279-o31  Pca-Mir-279-o32  Pca-Mir-279-o33 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tur-Mir-279-P27a  Tur-Mir-279-P27b 
Node of Origin (locus) P. caudatus
Node of Origin (family) Protostomia
Genome context
(Priapulus_caudatus_gca000485595v2)		 KQ715408.1: 301499-301556 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGCGGUGCGAAGGAGACCAAUUCCUGUGGAUGACUGUGUUUCUGGUGCAUGUAGUUGAGAACCAUGACUAGAUCCACACUCAUCCACAGUAAGUGGUAAAUGUGACAGCGCGCAGU
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Structure
        10          20        30        40        50         
UUUGCGGUGCGAAGGAG--|   A  C          C    UU      G    UAGUU 
                   ACCA UU CUGUGGAUGA UGUG  UCUGGU CAUG     \
                   UGGU AA GACACCUACU ACAC  AGAUCA GUAC     G
UGACGCGCGACAGUGUAAA^   G  U          C    CU      -    CAAGA 
      110       100        90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of ecdysozoans and how the priapulid Mir-279s relate to the Mir-279s in nematodes or arthropods and thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
-   +
Pr Pr Pr
Star sequence

Pca-Mir-279-o27_5p*
mirBase accessionNone
Sequence 
0- GAUGACUGUGUUUCUGGUGCAUG -23
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Mature sequence

Pca-Mir-279-o27_3p
mirBase accessionNone
Sequence 
36- UGACUAGAUCCACACUCAUCCA -58
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