MirGeneDB 3.0

MirGeneDB ID

Tur-Mir-279-P27b

Family name MIR-279 (all species)
Seed GACUAGA
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-279
Paralogues Tur-Mir-279-P26  Tur-Mir-279-P27a 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pca-Mir-279-o27  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) T. urticae
Node of Origin (family) Protostomia
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587308.1: 2463767-2463829 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P27b)
Mir-279-P27b HE587308.1: 2463767-2463829 [-] Ensembl
Mir-279-P27a HE587308.1: 2468600-2468662 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUUAUCCCAUACUGGACACUUUGACUGGAUGAAUGCGUUUCUAGACCAUGUUCAUGUUGAACUAUUCAUGACUAGAUCCACAUUCAUCCAGACAGCCAAUUGAUUUUCAAGACCCUUAUA
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Structure
        10        20          30        40        50        60 
AUUUUUAUCCCAUACUGGACACU--|  A           CGUU     AC    UUCAUGU 
                         UUG CUGGAUGAAUG    UCUAG  CAUG       U
                         GAC GACCUACUUAC    AGAUC  GUAC       G
AUAUUCCCAGAACUUUUAGUUAACC^  A           ACCU     A-    UUAUCAA 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Tur-Mir-279-P27b_5p*

mirBase accessionMIMAT0023106
Sequence
0- GAUGAAUGCGUUUCUAGACCAUG -23
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Mature sequence

Tur-Mir-279-P27b_3p

mirBase accessionMIMAT0023107
Sequence
41- UGACUAGAUCCACAUUCAUCCA -63
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