MirGeneDB ID | Tur-Mir-279-P26 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Two-spotted spider mite (Tetranychus urticae) |
MiRBase ID |
|
Paralogues |
Tur-Mir-279-P27a
Tur-Mir-279-P27b
|
Orthologues |
Agr-Mir-279
Asu-Mir-279-o26
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
Node of Origin (locus) |
T. urticae
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587309.1: 1091933-1091994 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAUUCAACGCCACUUUGACAAUGAUGAUGAAUGAGUUCGGGCCUGUCCAUGUGUUCAUGUUAAAAUUCAUGACUAGACCCAUACUCAUCCAUUAUUGUUGUAUUUUCAUCGGCUAAAUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAUUCAACGCCACUUUG--| UG A UC C UC UGUUCAU
ACAA AUGAUG AUGAGU GGG CUG CAUG G
UGUU UAUUAC UACUCA CCC GAU GUAC U
UUAUAAAUCGGCUACUUUUA^ GU C UA A CA UUAAAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Tur-Mir-279-P26_5p* |
mirBase accession | None |
Sequence |
0- AAUGAGUUCGGGCCUGUCCAUG -22
Get sequence
|
Mature sequence |
Tur-Mir-279-P26_3p |
mirBase accession | None |
Sequence |
40- UGACUAGACCCAUACUCAUCCA -62
Get sequence
|