MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-279-P26

Family name MIR-279 (all species)
Seed GACUAGA
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID
Paralogues Tur-Mir-279-P27a  Tur-Mir-279-P27b 
Orthologues Agr-Mir-279  Asu-Mir-279-o26  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) T. urticae
Node of Origin (family) Protostomia
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587309.1: 1091933-1091994 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUUCAACGCCACUUUGACAAUGAUGAUGAAUGAGUUCGGGCCUGUCCAUGUGUUCAUGUUAAAAUUCAUGACUAGACCCAUACUCAUCCAUUAUUGUUGUAUUUUCAUCGGCUAAAUAUU
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Structure
        10          20        30        40        50        60
AAAUUCAACGCCACUUUG--|   UG      A      UC   C   UC    UGUUCAU 
                    ACAA  AUGAUG AUGAGU  GGG CUG  CAUG       G
                    UGUU  UAUUAC UACUCA  CCC GAU  GUAC       U
UUAUAAAUCGGCUACUUUUA^   GU      C      UA   A   CA    UUAAAAU 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr
Star sequence

Tur-Mir-279-P26_5p*
mirBase accessionNone
Sequence 
0- AAUGAGUUCGGGCCUGUCCAUG -22
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Mature sequence

Tur-Mir-279-P26_3p
mirBase accessionNone
Sequence 
40- UGACUAGACCCAUACUCAUCCA -62
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