MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-279-o46

Family name MIR-279 (all species)
Seed GACUAGA
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-279-o44  Pdu-Mir-279-o45  Pdu-Mir-279-o47 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000003.1: 17716402-17716456 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACUUCAAAGAAGAACUUGCUGCCUUCCUGCAUGACUGUAGGUCUAGUCCAUGUUUAAUGUCAUGACUAGAUACACACUCAUCCAGGCUGGUUAGCAGAUCUACAAUUAAUCUAU
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Structure
        10         20         30        40        50       
GACUUCAAAGAAGAACU-    -|  UU    C    C   AG        C   UUU 
                  UGCU GCC  CCUG AUGA UGU  GUCUAGUC AUG   A
                  ACGA UGG  GGAC UACU ACA  UAGAUCAG UAC   A
UAUCUAAUUAACAUCUAG    U^  UC    C    C   CA        -   UGU 
   110       100        90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-279-o46_5p*
mirBase accessionNone
Sequence 
0- CAUGACUGUAGGUCUAGUCCAUG -23
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Mature sequence

Pdu-Mir-279-o46_3p
mirBase accessionNone
Sequence 
33- UGACUAGAUACACACUCAUCCA -55
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