Mir-279-o45

MirGeneDB ID

Pdu-Mir-279-o45

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Pdu-Mir-279-o44 Pdu-Mir-279-o46 Pdu-Mir-279-o47

Orthologues

Agr-Mir-279 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

P. dumerilii

Node of Origin (family)

Protostomia

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000009.1: 2657711-2657763 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

ACUUCAAAGAAGAACUUGCUGCCUUCCUGCAUGACUGUAGGUCUAGUCCAUGUUUAAUGUCAUGACUAGAUCCACACUCAUCCAGGCGGGUUAGCCGAUCUACAUAUCAAUCU

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Structure

        10         20         30        40        50      
ACUUCAAAGAAGAACUU-   -|   U    C    C   A         C   UUU 
                  GCU GCCU CCUG AUGA UGU GGUCUAGUC AUG   A
                  CGA UGGG GGAC UACU ACA CUAGAUCAG UAC   A
UCUAACUAUACAUCUAGC   U^   C    C    C   C         -   UGU 
 110       100        90        80        70         60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Star sequence

Pdu-Mir-279-o45_5p*

mirBase accession

None

Sequence

0- AUGACUGUAGGUCUAGUCCAUG -22

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Mature sequence

Pdu-Mir-279-o45_3p

mirBase accession

None

Sequence

32- UGACUAGAUCCACACUCAUCC -53

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