MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-279-o44

Family name MIR-279 (all species)
Seed GACUAGA
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-279-o45  Pdu-Mir-279-o46  Pdu-Mir-279-o47 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 184772430-184772489 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCGAAGAAGAUCCGUUUAUGGUUUCGGUGGGUGAGUGGGAUUUUGGUCAUGUUUUUUAAUAUCUUCAUGACUAGAUCCACACUCAUCCAUUGCGGCCAGCACGCUCUCCACUGUUCAAC
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Structure
        10          20        30         40        50         
UUCGAAGAAGAUCCGUUUA--    UU             -|     U       UUUUUU 
                     UGGU  CGGUGGGUGAGUG GGAUUU GGUCAUG      A
                     ACCG  GUUACCUACUCAC CCUAGA UCAGUAC      A
CAACUUGUCACCUCUCGCACG    GC             A^     -       UUCUAU 
.       110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-279-o44_5p*
mirBase accessionNone
Sequence 
0- GGUGAGUGGGAUUUUGGUCAUG -22
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Mature sequence

Pdu-Mir-279-o44_3p
mirBase accessionNone
Sequence 
38- UGACUAGAUCCACACUCAUCCA -60
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