Mir-279-P11b

MirGeneDB ID

Cbr-Mir-279-P11b

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-45-2

Paralogues

Cbr-Mir-279-P10 Cbr-Mir-279-P11a Cbr-Mir-279-P12 Cbr-Mir-279-P13

Orthologues

Agr-Mir-279 Bpl-Mir-279 Cel-Mir-279-P11 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Protostomia

Genome context
(CB4)

II: 8903154-8903219 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-279-P11b)

Mir-279-P10 II: 8891068-8891135 [-] Ensembl
Mir-2-o4 II: 8891220-8891282 [-] Ensembl
Mir-36-o25 II: 8891373-8891435 [-] Ensembl
Mir-279-P11a II: 8900359-8900424 [-] Ensembl
Mir-279-P11b II: 8903154-8903219 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CGGUAAGCUUUUCUGCUAAACAGUGCCACGCUGGAUGUGUUCGUUAGUCAUAGUAACCUCAUCAAUUCAGGCUUAUGACUAGAGACACAUUCAGCUUGGCGCCAAACUAUGCAGAACUUUUUUCUC

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Structure

        10        20          30        40        50        60   
CGGUAAGCUUUUCUGCUAAACA--|     C            CG         GUAACCUCAU 
                        GUGCCA GCUGGAUGUGUU  UUAGUCAUA          \
                        CGCGGU CGACUUACACAG  GAUCAGUAU          C
CUCUUUUUUCAAGACGUAUCAAAC^     U            A-         UCGGACUUAA 
    120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14	15	16	Cb	Ea	Ma	Yo

Star sequence

Cbr-Mir-279-P11b_5p*

mirBase accession

None

Sequence

0- CUGGAUGUGUUCGUUAGUCAUA -22

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Mature sequence

Cbr-Mir-279-P11b_3p

mirBase accession

MIMAT0000470

Sequence

45- UGACUAGAGACACAUUCAGCU -66

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