MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-279-P12

Family name MIR-279 (all species)
Seed GACUAGA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-61
Paralogues Cbr-Mir-279-P10  Cbr-Mir-279-P11a  Cbr-Mir-279-P11b  Cbr-Mir-279-P13 
Orthologues Agr-Mir-279  Bpl-Mir-279  Cel-Mir-279-P12  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)		 V: 9339608-9339664 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P12)		 Mir-2-P11 V: 9339455-9339515 [-] Ensembl
Mir-279-P12 V: 9339608-9339664 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUACUCCUGUACUUGAUCGGUGUCUCGAGCCGAGUUAAGGCUAAUAGUCCUUCCGGUGUAUGGUAAUGACUAGAACCUUGACUCUGCUCGAGUUACUGAGCUCUUUGACCCCGCCCC
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Structure
        10          20        30        40        50        
CUACUCCUGUACUUGAU--|    U       C         CUAA     CUUCCGGU 
                   CGGUG CUCGAGC GAGUUAAGG    UAGUC        G
                   GUCAU GAGCUCG CUCAGUUCC    AUCAG        U
CCCCGCCCCAGUUUCUCGA^    U       U         AAG-     UAAUGGUA 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-279-P12_5p*
mirBase accessionNone
Sequence 
0- CGAGUUAAGGCUAAUAGUCCUU -22
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Mature sequence

Cbr-Mir-279-P12_3p
mirBase accessionMIMAT0001302
Sequence 
36- UGACUAGAACCUUGACUCUGC -57
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