MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-279-P11a

Family name MIR-279 (all species)
Seed GACUAGA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-45-1
Paralogues Cbr-Mir-279-P10  Cbr-Mir-279-P11b  Cbr-Mir-279-P12  Cbr-Mir-279-P13 
Orthologues Agr-Mir-279  Bpl-Mir-279  Cel-Mir-279-P11  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)		 II: 8900359-8900424 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P11a)		 Mir-279-P10 II: 8891068-8891135 [-] Ensembl
Mir-2-o4 II: 8891220-8891282 [-] Ensembl
Mir-36-o25 II: 8891373-8891435 [-] Ensembl
Mir-279-P11a II: 8900359-8900424 [-] Ensembl
Mir-279-P11b II: 8903154-8903219 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGUAAGCUUUUCUGCUAAACAGUGCCACGCUGGAUGUGCUCGUUAGUCAUAGUAACCUCAUCAAUUCAGGCUUAUGACUAGAGACACAUUCAGCUUGGCGCCAAACUAUGCAGAACUUUUUUAUC
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Structure
        10        20          30         40        50        60   
AGGUAAGCUUUUCUGCUAAACA--      C          -|  GU        GUAACCUCAU 
                        GUGCCA GCUGGAUGUG CUC  UAGUCAUA          \
                        CGCGGU CGACUUACAC GAG  AUCAGUAU          C
CUAUUUUUUCAAGACGUAUCAAAC      U          A^  --        UCGGACUUAA 
    120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-279-P11a_5p*
mirBase accessionNone
Sequence 
0- CUGGAUGUGCUCGUUAGUCAUA -22
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Mature sequence

Cbr-Mir-279-P11a_3p
mirBase accessionMIMAT0000470
Sequence 
45- UGACUAGAGACACAUUCAGCU -66
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