MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-279-P12

Family name MIR-279 (all species)
Seed GACUAGA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-61
Paralogues Cel-Mir-279-P10  Cel-Mir-279-P11  Cel-Mir-279-P13 
Orthologues Agr-Mir-279  Bpl-Mir-279  Cbr-Mir-279-P12  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(ce11)
chrV: 11770076-11770132 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P12)
Mir-2-P11 chrV: 11769936-11769998 [-] UCSC Ensembl
Mir-279-P12 chrV: 11770076-11770132 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCUAUUCCAUUAUCGCUGAACCUCGAGAUGGGUUACGGGGCUUAGUCCUUCCUCCGUAUGGCAAUGACUAGAACCGUUACUCAUCUCGAGGUUUCGGUGAUCCUUCAAUUUCCCC
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Structure
        10         20         30        40        50        
UGCCUAUUCCAUUAUCG-   -|              U    GG  U    CUUCCUCC 
                  CUG AACCUCGAGAUGGGU ACGG  CU AGUC        G
                  GGC UUGGAGCUCUACUCA UGCC  GA UCAG        U
CCCCUUUAACUUCCUAGU   U^              U    AA  -    UAACGGUA 
     110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-279-P12_5p*

mirBase accessionMIMAT0015103
Sequence
0- UGGGUUACGGGGCUUAGUCCUU -22
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Proposed targets microrna.org: MIMAT0015103
Mature sequence

Cel-Mir-279-P12_3p

mirBase accessionMIMAT0000033
Sequence
36- UGACUAGAACCGUUACUCAUC -57
Get sequence
Proposed targets microrna.org: MIMAT0000033
TargetScanWorm: cel-miR-61