MirGeneDB 3.0

MirGeneDB ID

Cte-Mir-279-o36

Family name MIR-279 (all species)
Seed GACUAGA
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-2720
Paralogues Cte-Mir-279-o34  Cte-Mir-279-o35 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) C. teleta
Node of Origin (family) Protostomia
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_39: 146223-146291 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-o36)
Mir-279-o35 CAPTEscaffold_39: 146002-146056 [+] Ensembl
Mir-279-o36 CAPTEscaffold_39: 146223-146291 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCCUUUUCUCUGCUGACUGCCUGUCUGUCUGGGUAAUCGCUCUAGACCAUGUGAUGUCGCAUGCUGCAGCGCUCAUGACUAGAGAGUUUACUCAUCCAGAGAGUAGUCUCCUUCUUCUCAUUGUUAG
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Structure
        10           20        30        40        50        60    
CUUCCUUUUCUCUGCUG---|    C G    UC       UCG      AC    UGAUGUCGCA 
                    ACUGC U UCUG  UGGGUAA   CUCUAG  CAUG          U
                    UGAUG A AGAC  ACUCAUU   GAGAUC  GUAC          G
GAUUGUUACUCUUCUUCCUC^    - G    CU       UGA      A-    UCGCGACGUC 
       120       110        100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of annelids thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ea Fe Fe La La Ma Ma To
Star sequence

Cte-Mir-279-o36_5p*

mirBase accessionMIMAT0013554
Sequence
0- CUGGGUAAUCGCUCUAGACCAUG -23
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Mature sequence

Cte-Mir-279-o36_3p

mirBase accessionMIMAT0013555
Sequence
47- UGACUAGAGAGUUUACUCAUCC -69
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