MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-279-o8

Family name MIR-279 (all species)
Seed GUGAGCG
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-279-o9  Dma-Mir-279-P1c  Dma-Mir-279-P1d  Dma-Mir-279-P2  Dma-Mir-279-P3 
Orthologues Agr-Mir-279  Bpl-Mir-279  Dpu-Mir-279-o8  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Lpo-Mir-279-P8  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046179.1: 204663-204723 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCGCAGUUCGAAUAUUUCCAUAGUGCUCAGUGAGCGUUGGUCUGGAUCACAGUGAAAACCCUCCUGUGACUAGAUUUUACACUCACUAAGCAACGUGAAAACUGACAGCGUUGUGUAGC
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Structure
        10        20          30        40         50          
GUUCGCAGUUCGAAUAUUUC--   AG    C      C  U-|      A     GUGAAA 
                      CAU  UGCU AGUGAG GU  GGUCUGG UCACA      \
                      GUG  ACGA UCACUC CA  UUAGAUC AGUGU      A
CGAUGUGUUGCGACAGUCAAAA   CA    A      A  UU^      -     CCUCCC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Mature sequence

Dma-Mir-279-o8_5p
mirBase accessionNone
Sequence 
0- AGUGAGCGUUGGUCUGGAUCACA -23
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Co-mature sequence

Dma-Mir-279-o8_3p
mirBase accessionNone
Sequence 
38- UGACUAGAUUUUACACUCACUAA -61
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