MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-279-o9

Family name MIR-279 (all species)
Seed GACUAGA
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-279-o8  Dma-Mir-279-P1c  Dma-Mir-279-P1d  Dma-Mir-279-P2  Dma-Mir-279-P3 
Orthologues Agr-Mir-279  Bpl-Mir-279  Csc-Mir-279-P9a  Csc-Mir-279-P9b  Dpu-Mir-279-o9  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046182.1: 2914774-2914845 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCUUCAAGUCUCGACACCACUUGUUGCCGGAUGAUUGUGUGUCUGGUCCAUGUUAACUUUAUUUGGCAUUCGACAUUCAUGACUAGAUCCACACUCAUCCAGUGACGUAGUUGGUAUUUCAUCCGUUUCAG
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Structure
        10         20         30        40        50        60      
GUCUUCAAGUCUCGACACC-   -|  UG C      U    UG       C   UUAACUUUAUUU 
                    ACU UGU  C GGAUGA UGUG  UCUGGUC AUG            \
                    UGA GCA  G CCUACU ACAC  AGAUCAG UAC            G
GACUUUGCCUACUUUAUGGU   U^  GU A      C    CU       -   UUACAGCUUACG 
130       120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-279-o9_5p*
mirBase accessionNone
Sequence 
0- GAUGAUUGUGUGUCUGGUCCAUG -23
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Mature sequence

Dma-Mir-279-o9_3p
mirBase accessionNone
Sequence 
50- UGACUAGAUCCACACUCAUCCA -72
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