MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-279-P9a

Family name MIR-279 (all species)
Seed GACUAGA
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-279-P9b 
Orthologues Agr-Mir-279  Bpl-Mir-279  Dma-Mir-279-o9  Dpu-Mir-279-o9  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Protostomia
Genome context
(GCF_000671375.1_CSC)		 NW_019384435.1: 45082-45138 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCGCAAGCCGAGGAAUCUCCUGUCACAACGGAUGACUGUGCCUCUGGUCCAUGUGCCUUGUAUCAUGACUAGAUCCACACUCAUCCACUGUGUCGGGAAUCACGACCGACCUUUGUU
Get precursor sequence
Structure
        10          20        30        40        50        
UCGCAAGCCGAGGAAUC--|    U    AC      C    CC       C   UGCC 
                   UCCUG CACA  GGAUGA UGUG  UCUGGUC AUG    U
                   AGGGC GUGU  CCUACU ACAC  AGAUCAG UAC    U
UUGUUUCCAGCCAGCACUA^    U    CA      C    CU       -   UAUG 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma
Star sequence

Csc-Mir-279-P9a_5p*
mirBase accessionNone
Sequence 
0- GAUGACUGUGCCUCUGGUCCAUG -23
Get sequence
Mature sequence

Csc-Mir-279-P9a_3p
mirBase accessionNone
Sequence 
35- UGACUAGAUCCACACUCAUCCA -57
Get sequence