MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-279-P19

Family name MIR-279 (all species)
Seed GACUAGA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-61a
Paralogues Sme-Mir-279-P20 
Orthologues Agr-Mir-279  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000252_dd_Smes_g4_252: 319043-319099 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAUUUUUUAGAAUAGAAACUCUUGAUACAGUUUGUGAGUUUCUAGGCAUAUAGAUUUUUCUAUGACUAGAAAGUUCACUUACUGUUGUACGAGUUUUAAACUUCAUUCUGUUUUA
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Structure
        10          20        30        40         50       
UUCAUUUUUUAGAAUAG--      UUGAU     UU     -|      G    UAGA 
                   AAACUC     ACAGU  GUGAG UUUCUAG CAUA    U
                   UUUGAG     UGUCA  CACUU AAAGAUC GUAU    U
AUUUUGUCUUACUUCAAAU      CAUGU     UU     G^      A    CUUU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-279-P19_5p*
mirBase accessionMIMAT0012105
Sequence 
0- AGUUUGUGAGUUUCUAGGCAUA -22
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Mature sequence

Sme-Mir-279-P19_3p
mirBase accessionMIMAT0003983
Sequence 
34- UGACUAGAAAGUUCACUUACUGU -57
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