Mir-279-P20

MirGeneDB ID

Sme-Mir-279-P20

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-61b

Paralogues

Sme-Mir-279-P19

Orthologues

Agr-Mir-279 Bpl-Mir-279 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Protostomia

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000037_dd_Smes_g4_37: 4595299-4595354 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCAUCAUUCCAAAGCGGCGAUUACACAGAAGAUCGUGUCGUUCUAGAUUACAUGGAUAUAUGUGACUAGAAUGUUCACCUUCUUUAGUAGAAUCCGCGAUCAUCUGGUCCCAUGC

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Structure

        10          20        30         40        50       
UGCAUCAUUCCAAAGCG-  -    AC  A     UC   U-|       A     UGG 
                  GC GAUU  AC GAAGA  GUG  CGUUCUAG UUACA   A
                  CG CUAA  UG UUUCU  CAC  GUAAGAUC AGUGU   U
CGUACCCUGGUCUACUAG  C    GA  A     UC   UU^       -     AUA 
    110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ag	Ag	Di	Gf	Ne	Ph	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Wh	Wh	Wh

Star sequence

Sme-Mir-279-P20_5p*

mirBase accession

MIMAT0012132

Sequence

0- AGAUCGUGUCGUUCUAGAUUACA -23

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Mature sequence

Sme-Mir-279-P20_3p

mirBase accession

MIMAT0011227

Sequence

33- UGACUAGAAUGUUCACCUUCUUU -56

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