MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-279-P6

Family name MIR-279 (all species)
Seed GACUAGA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-279-P4  Lpo-Mir-279-P5  Lpo-Mir-279-P7  Lpo-Mir-279-P8 
Orthologues Agr-Mir-279  Bge-Mir-279-o6  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666253.1: 358370-358428 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGCGAAUGUGAUUGUUUAUCUUUGACUGUGGAUGAUUGUGAUUCUGGUUCAUGUGUACUUGUUACCAUGACUAGAUCCACACUCAUCCAUAGAAACUGAUAUUUCUUCGAUGCACGCGC
Get precursor sequence
Structure
        10          20        30        40        50         
GGCGAAUGUGAUUGUUU--|  UUUGA          U    AU      U    UGUAC 
                   AUC     CUGUGGAUGA UGUG  UCUGGU CAUG     U
                   UAG     GAUACCUACU ACAC  AGAUCA GUAC     U
CGCGCACGUAGCUUCUUUA^  UCAAA          C    CU      -    CAUUG 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-279-P6_5p*
mirBase accessionNone
Sequence 
0- GAUGAUUGUGAUUCUGGUUCAUG -23
Get sequence
Mature sequence

Lpo-Mir-279-P6_3p
mirBase accessionNone
Sequence 
37- UGACUAGAUCCACACUCAUCCA -59
Get sequence