MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-9-P16

Family name MIR-9 (all species)
Seed CUUUGGU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-244
Paralogues Cel-Mir-9-P14  Cel-Mir-9-P15 
Orthologues Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cbr-Mir-9-P16  Cin-Mir-9  Cte-Mir-9  Dma-Mir-9-o16  Dpu-Mir-9-o16  Esc-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Npo-Mir-9  Obi-Mir-9  Ovu-Mir-9  Pmi-Mir-9  Spu-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Bilateria
Genome context
(ce11)		 chrI: 4684336-4684399 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUAAUUUUUUCCCUCCAUAUCUCAAUCUCUUUGGUUGUACAAAGUGGUAUGGCUCAUCGAAUAAGCACAUACUGCUUUUCAGCUAAAGGAAUUGAGAUUUUGUAGGCUUUUUCAUUUUUAC
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Structure
        10         20         30        40        50        60  
AUUUUAAUUUUUUCCCUC-  U-|       CU         UAC    UG     GCUCAUC 
                   CA  AUCUCAAU  CUUUGGUUG   AAAG  GUAUG       G
                   GU  UAGAGUUA  GAAAUCGAC   UUUC  CAUAC       A
CAUUUUUACUUUUUCGGAU  UU^       AG         U--    GU     ACGAAUA 
  120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Mature sequence

Cel-Mir-9-P16_5p
mirBase accessionMIMAT0000300
Sequence 
0- UCUUUGGUUGUACAAAGUGGUAUG -24
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Proposed targets microrna.org: MIMAT0000300
TargetScanWorm: cel-miR-244
Star sequence

Cel-Mir-9-P16_3p*
mirBase accessionMIMAT0015118
Sequence 
42- UACUGCUUUUCAGCUAAAGGAA -64
Get sequence
Proposed targets microrna.org: MIMAT0015118