Mir-9-P14

MirGeneDB ID

Cel-Mir-9-P14

Family name

MIR-9 (all species)

Seed

UAAAGCU

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-75

Paralogues

Cel-Mir-9-P15 Cel-Mir-9-P16

Orthologues

Agr-Mir-9 Bfl-Mir-9 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cbr-Mir-9-P14 Cin-Mir-9 Cte-Mir-9 Dgr-Mir-9 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Bilateria

Genome context
(ce11)

chrX: 2372475-2372534 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P14)

Mir-73-P1 chrX: 2368787-2368848 [+] UCSC Ensembl
Mir-73-P2 chrX: 2369062-2369124 [+] UCSC Ensembl
Mir-9-P14 chrX: 2372475-2372534 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCUACUUUCUUGUUGCUUUGAAGAAUUGCAGUCGGUUGCAAGCUUAAAUACAAAUCCGAAUUGUUAUUAAAGCUACCAACCGGCUUCAAGUCUGAAAGAGCAGUUGAAAAAAGGUAAG

Get precursor sequence

Structure

        10         20         30        40        50         
UUUCUACUUUCUUGUUG-    GA-|  A   C         CA     A    CAAAUC 
                  CUUU   AGA UUG AGUCGGUUG  AGCUU AAUA      C
                  GAGA   UCU AAC UCGGCCAAC  UCGAA UUAU      G
GAAUGGAAAAAAGUUGAC    AAG^  G   U         CA     A    UGUUAA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Da	Ea	Mi	Wi	Yo	Yo

Star sequence

Cel-Mir-9-P14_5p*

mirBase accession

MIMAT0015108

Sequence

0- CAGUCGGUUGCAAGCUUAAAUA -22

Get sequence

Proposed targets

microrna.org: MIMAT0015108

Mature sequence

Cel-Mir-9-P14_3p

mirBase accession

MIMAT0000047

Sequence

38- UUAAAGCUACCAACCGGCUUCA -60

Get sequence

Proposed targets

microrna.org: MIMAT0000047
TargetScanWorm: cel-miR-75