MirGeneDB 3.0
MirGeneDB ID

Sko-Mir-9-v1

Family name MIR-9 (all species)
Seed CUUUGGU
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-9
Paralogues Sko-Mir-9-v2 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pfl-Mir-9-v1  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Skow_1.1)		 NW_003125887.1: 164505-164564 [-]
Clustered miRNAs
(< 50kb from Mir-9-v1)		 Mir-9-v1 NW_003125887.1: 164505-164564 [-]
Mir-9-v2 NW_003125887.1: 164505-164564 [-]
Precursor
(pre-Mir +30nt flank)
UUGAAUUCCGAAUUUUUGGCUCUCGUUUUCUCUUUGGUUAUCUAGCUGUAUGAGUGUACAUGACAUUAUAAAGCUAGGUUACCAAAGACAAAAACAGAUGCCAGUGAUCACCGAUGCCGG
Get precursor sequence
Structure
        10         20         30         40        50         
UUGAAUUCCGAAUUUUU-   -|  C     C-        U        G     GUGUA 
                  GGC UCU GUUUU  UCUUUGGU AUCUAGCU UAUGA     C
                  CCG AGA CAAAA  AGAAACCA UGGAUCGA AUAUU     A
GGCCGUAGCCACUAGUGA   U^  -     AC        U        A     ACAGU 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Sko-Mir-9-v1_5p
mirBase accessionMIMAT0009610
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Co-mature sequence

Sko-Mir-9-v1_3p
mirBase accessionMIMAT0009618
Sequence 
37- AUAAAGCUAGGUUACCAAAGACA -60
Get sequence