MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-9-P28

Family name MIR-9 (all species)
Seed CUUUGGU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-9a
Paralogues Sme-Mir-9-P29  Sme-Mir-9-P30 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000020_dd_Smes_g4_20: 3968660-3968723 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUAUUCAAUUGUUUAAUUGACUAUAUGGUCUUUGGUUUUCUAGCUGUAUGAUUGUAAAAUUUGUUGAAAUCACACACUAGAUUACCAAUUUCAUAUAUUAUAUGUGAUCAUCUAUUAUGAUG
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Structure
        10        20          30        40        50        60  
UUUUAUUCAAUUGUUUAAUUGAC--|      UCU     UU     C   A   UUGUAAAA 
                         UAUAUGG   UUGGU  UCUAG UGU UGA        U
                         AUAUACU   AACCA  AGAUC ACA ACU        U
GUAGUAUUAUCUACUAGUGUAUAUU^      UU-     UU     -   C   AAAGUUGU 
  120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-9-P28_5p
mirBase accessionMIMAT0011248
Sequence 
0- UCUUUGGUUUUCUAGCUGUAUGA -23
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Star sequence

Sme-Mir-9-P28_3p*
mirBase accessionMIMAT0012146
Sequence 
43- ACACACUAGAUUACCAAUUUC -64
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