MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-9-P29

Family name MIR-9 (all species)
Seed CUUUGGU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-9b
Paralogues Sme-Mir-9-P28  Sme-Mir-9-P30 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000025_dd_Smes_g4_25: 1299427-1299482 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUUUCGUAACAAAUGUCAAAUCAAGAUUUCUUUGGUUGUUUAGCUAUAUGAAUGUCUAGGUCAUAUACUGCAUAAUCAAAGUUGUCUGAUUUGAGUAAGCUUCCGAAGUAAUUU
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Structure
        10           20        30        40        50        
GAAUUUCGUAACAAAUG---|       A   UU          U   C       AUGU 
                    UCAAAUCA GAU  CUUUGGUUGU UAG UAUAUGA    \
                    AGUUUAGU CUG  GAAACUAAUA GUC AUAUACU    C
UUUAAUGAAGCCUUCGAAUG^       -   UU          C   -       GGAU 
    110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-9-P29_5p
mirBase accessionMIMAT0011247
Sequence 
0- UCUUUGGUUGUUUAGCUAUAUGA -23
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Star sequence

Sme-Mir-9-P29_3p*
mirBase accessionMIMAT0012145
Sequence 
34- AUAUACUGCAUAAUCAAAGUUG -56
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