MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-9-P30

Family name MIR-9 (all species)
Seed UAAAGCU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-79
Paralogues Sme-Mir-9-P28  Sme-Mir-9-P29 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000017_dd_Smes_g4_17: 1530998-1531058 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUAAAAAUUUGUUGAAACAUAAUCUCUUCUUUGGUCAUCUGGCUUUGUGAUAGAGAAAUUAUCAUCGUAAAGCUAAAUUACCAAAGUGCUAGAAAAUGUUGGAUCAUCUAUGAAACUUU
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Structure
        10          20        30         40        50         
UUUUAAAAAUUUGUUGA--     AA   CUU-|      C  C           UAGAGA 
                   AACAU  UCU    CUUUGGU AU UGGCUUUGUGA      A
                   UUGUA  AGA    GAAACCA UA AUCGAAAUGCU      A
UUUCAAAGUAUCUACUAGG     AA   UCGU^      U  A           ACUAUU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-9-P30_5p*
mirBase accessionMIMAT0012108
Sequence 
0- CUUUGGUCAUCUGGCUUUGUGA -22
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Mature sequence

Sme-Mir-9-P30_3p
mirBase accessionMIMAT0003988
Sequence 
38- GUAAAGCUAAAUUACCAAAGUGC -61
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