MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-9-P39a

Family name MIR-9 (all species)
Seed CUUUGGU
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-9-1
Paralogues Tur-Mir-9-P39b 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587301.1: 1879586-1879648 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P39a)		 Mir-9-P39b HE587301.1: 1878278-1878340 [-] Ensembl
Mir-9-P39a HE587301.1: 1879586-1879648 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAAUUAUUAUCUCGUUGCUGAUUUCCUCAUCUUUGGUUAUUUAGCUUUCUGAUUGCCCGUACAAACAUCAUAAAGCUAUUUAACCAAAUUUGAGGACCCAGCUUGACCUCAUCAUCUUAAAU
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Structure
        10           20        30        40        50        60 
AUAAUUAUUAUCUCGUU---|   AUU      UC        UU       C   UUGCCCG 
                    GCUG   UCCUCA  UUUGGUUA  UAGCUUU UGA       \
                    CGAC   AGGAGU  AAACCAAU  AUCGAAA ACU       U
UAAAUUCUACUACUCCAGUU^   CC-      UU        UU       U   ACAAACA 
 120       110       100         90        80        70
Deep sequencing
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Commenttwo identical copies
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
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Mature sequence

Tur-Mir-9-P39a_5p
mirBase accessionMIMAT0023082
Sequence 
0- UCUUUGGUUAUUUAGCUUUCUGA -23
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Star sequence

Tur-Mir-9-P39a_3p*
mirBase accessionMIMAT0023083
Sequence 
40- AUAAAGCUAUUUAACCAAAUUUG -63
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