| MirGeneDB ID | Asu-Mir-9-o18 |
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| Family name |
MIR-9 (all species) |
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| Seed |
UAAAGCU |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-79
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| Paralogues |
Asu-Mir-9-o17
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| Orthologues |
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cgi-Mir-9-P18
Cin-Mir-9
Cte-Mir-9
Esc-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Npo-Mir-9
Obi-Mir-9
Ovu-Mir-9
Pmi-Mir-9
Spu-Mir-9
Xbo-Mir-9
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| Node of Origin (locus) |
A. suum
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| Node of Origin (family) |
Bilateria
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold46: 2189447-2189505 [-]
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Precursor
(pre-Mir +30nt flank) |
CGUUGUUUACCUGAGUGGUGUUGUCUUUCCCUUUGGUUAUCUGGCUGUAUGAGUGAGCCAUAACAUCAUAAAGCUAGGUUACCAAAGCUAAGCACAAUGCCUAAGCGCCCUAUCCAUUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CGUUGUUUACCUGAGUG-- -| UCC U G GUGAGC
GUGUUGU CUU CUUUGGU AUCUGGCU UAUGA \
CGUAACA GAA GAAACCA UGGAUCGA AUACU C
CUUACCUAUCCCGCGAAUC C^ UC- U A ACAAUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| 0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-9-o18_5p* |
| mirBase accession | MIMAT0021472 |
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| Sequence |
0- CUUUGGUUAUCUGGCUGUAUGA -22
Get sequence
|
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| Mature sequence |
Asu-Mir-9-o18_3p |
| mirBase accession | MIMAT0021473 |
|---|
| Sequence |
37- AUAAAGCUAGGUUACCAAAGCU -59
Get sequence
|
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