MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-9-P25

Family name MIR-9 (all species)
Seed CUUUGGU
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-9-P22  Lpo-Mir-9-P23  Lpo-Mir-9-P24 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013665845.1: 188152-188211 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCAUCAGUUCUUGAAGGUGUUGUUGUUCUCUUUGGUUAUCUAGCUGUAUGAGUGAGUUCAAUUUCAUAAAGCUAGGUUACUAAAGUUACAACAAAGCCUACCACCAUCAAAGUCAAGA
Get precursor sequence
Structure
        10           20        30        40        50         
CAUCAUCAGUUCUUGAA---|  G       UCU       U        G    AGUGAG 
                    GGU UUGUUGU   CUUUGGU AUCUAGCU UAUG      U
                    CCG AACAACA   GAAAUCA UGGAUCGA AUAC      U
AGAACUGAAACUACCACCAU^  A       UU-       U        A    UUUAAC 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
CommentThe 3' end of the 5p arm appears to be monoadenylated.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Mature sequence

Lpo-Mir-9-P25_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUG -22
Get sequence
Star sequence

Lpo-Mir-9-P25_3p*
mirBase accessionNone
Sequence 
38- UAAAGCUAGGUUACUAAAGUUA -60
Get sequence