MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-9-P23

Family name MIR-9 (all species)
Seed CUUUGGU
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-9-P22  Lpo-Mir-9-P24  Lpo-Mir-9-P25 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666505.1: 364125-364184 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUUCGAGACUGUAAGGCGUUGAUAUUUUCUUUGGUUAUCUAGCUGUAUGAGUGCAAUUGACAUCAUAAAGCUAGGUUACCAAAGUUAAAAACAACUGCUAUAUUCAUCGGAUGCGAU
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Structure
        10         20         30        40        50         
UUUUUUCGAGACUGUAA-   -|   AUA  UU       U        G     GUGCA 
                  GGC GUUG   UU  CUUUGGU AUCUAGCU UAUGA     A
                  UCG CAAC   AA  GAAACCA UGGAUCGA AUACU     U
UAGCGUAGGCUACUUAUA   U^   AAA  UU       U        A     ACAGU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ge Ge So So So To
Mature sequence

Lpo-Mir-9-P23_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Lpo-Mir-9-P23_3p*
mirBase accessionNone
Sequence 
37- AUAAAGCUAGGUUACCAAAGUUA -60
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