MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-9-P19

Family name MIR-9 (all species)
Seed CUUUGGU
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-9-P17  Mgi-Mir-9-P18 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) C. gigas
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold42448: 83582-83643 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CACGUGACCAAGAUGGCGUUGCUAGUUUUGUCUUUGGUUAUCUAGCUGUAUGAUUUCAUUUAAUAUUUCAUAAAGCUAGGUUACCAAAGGCAAAAAUGGCUGUCGAUCCCUGCGUUUGACCA
Get precursor sequence
Structure
        10        20          30        40        50        60
CACGUGACCAAGAUGGCGUU--|   G             U        G     UUUCAU 
                      GCUA UUUUGUCUUUGGU AUCUAGCU UAUGA      U
                      CGGU AAAACGGAAACCA UGGAUCGA AUACU      U
ACCAGUUUGCGUCCCUAGCUGU^   A             U        A     UUAUAA 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-9-P19_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
Star sequence

Mgi-Mir-9-P19_3p*
mirBase accessionNone
Sequence 
39- AUAAAGCUAGGUUACCAAAGGCA -62
Get sequence