MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-9-P27

Family name MIR-9 (all species)
Seed CUUUGGU
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-9-P26 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Bilateria
Genome context
(GCF_000671375.1_CSC)		 NW_019385150.1: 14178-14237 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGGCCCCAAUUUCCGUUGGCGUCGCUAUUUUCUUUGGUUAUCUAGCUGUAUGAGUGUAAACGACGUCAUAAAGCUAGGUUACCAAAGUUAAGAGCGAAGGCCGCAUACGACUUUAUUCUC
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Structure
        10         20         30        40        50         
CGGCCCCAAUUUCCGUU-   G-|    A  UU       U        G     GUGUA 
                  GGC  UCGCU UU  CUUUGGU AUCUAGCU UAUGA     A
                  CCG  AGCGA AA  GAAACCA UGGAUCGA AUACU     A
CUCUUAUUUCAGCAUACG   GA^    G  UU       U        A     GCAGC 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma
Mature sequence

Csc-Mir-9-P27_5p
mirBase accessionNone
Sequence 
0- UCUUUGGUUAUCUAGCUGUAUGA -23
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Star sequence

Csc-Mir-9-P27_3p*
mirBase accessionNone
Sequence 
37- AUAAAGCUAGGUUACCAAAGUUA -60
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