Mir-29-P2h

MirGeneDB ID

Tca-Mir-29-P2h

Family name

MIR-29 (all species)

Seed

ACUGAAU

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-998

Paralogues

Tca-Mir-29-P1 Tca-Mir-29-P2g

Orthologues

Aae-Mir-29-P2h Aga-Mir-29-P2h Agr-Mir-29-P2 Asu-Mir-29-P2 Bfl-Mir-29-P2 Bge-Mir-29-P2h Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cte-Mir-29-P2 Dan-Mir-29-P2h Dgr-Mir-29-P2 Dma-Mir-29-P2 Dme-Mir-29-P2h Dmo-Mir-29-P2h Dpu-Mir-29-P2 Dsi-Mir-29-P2h Dya-Mir-29-P2h Eba-Mir-29-P2 Esc-Mir-29-P2 Gpa-Mir-29-P2h Gsp-Mir-29 Hme-Mir-29-P2h Hru-Mir-29-P2 Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Mgi-Mir-29-P2 Mom-Mir-29-P2 Npo-Mir-29-P2 Obi-Mir-29-P2 Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pau-Mir-29-P2 Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sko-Mir-29-P2 Sme-Mir-29-o2 Spu-Mir-29-P2 War-Mir-29-P2 Xbo-Mir-29-P2

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(Tcas5.2)

LG5: 7197706-7197758 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2h)

Mir-2-P7 LG5: 7197519-7197576 [+] Ensembl
Mir-29-P2h LG5: 7197706-7197758 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UAUAACAUGGGACGCUUUGCCACUACGUUGUACUGAAUUUCAUGUGGGCUGCUGUUUUGCGUAGCACCAUGGGAUUCAGCUCAUCGUUUGGUUAUCUGCUAACUGCUUGCAAA

Get precursor sequence

Structure

        10           20        30        40        50      
UAUAACAUGGGACGCUUU---|   CU   U  UA      UU    UGG     UGU 
                     GCCA  ACG UG  CUGAAU  CAUG   GCUGC   U
                     UGGU  UGC AC  GACUUA  GUAC   CGAUG   U
AAACGUUCGUCAAUCGUCUAU^   U-   U  UC      GG    CA-     CGU 
 110       100        90         80        70         60