Mir-29-P2h

MirGeneDB ID

Aae-Mir-29-P2h

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Yellow fever mosquito (Aedes aegypti)

MiRBase ID

aae-mir-998

Paralogues

Aae-Mir-29-P1

Orthologues

Aga-Mir-29-P2h Agr-Mir-29-P2 Asu-Mir-29-P2 Bfl-Mir-29-P2 Bge-Mir-29-P2h Bla-Mir-29-P2 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cte-Mir-29-P2 Dan-Mir-29-P2h Dgr-Mir-29-P2 Dma-Mir-29-P2 Dme-Mir-29-P2h Dmo-Mir-29-P2h Dpu-Mir-29-P2 Dsi-Mir-29-P2h Dya-Mir-29-P2h Eba-Mir-29-P2 Esc-Mir-29-P2 Gpa-Mir-29-P2h Gsp-Mir-29 Hme-Mir-29-P2h Hru-Mir-29-P2 Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Mgi-Mir-29-P2 Mom-Mir-29-P2 Npo-Mir-29-P2 Obi-Mir-29-P2 Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pau-Mir-29-P2 Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rph-Mir-29-P2 Sko-Mir-29-P2 Sme-Mir-29-o2 Spu-Mir-29-P2 Tca-Mir-29-P2h War-Mir-29-P2 Xbo-Mir-29-P2

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(Aaeg_L3)

supercont1.744: 322296-322358 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2h)

Mir-2-P7 supercont1.744: 322020-322083 [+] Ensembl
Mir-29-P2h supercont1.744: 322296-322358 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GGUAGCCGGCUAAAAAGAACCAAUACCCGAACUGAACUCUCGUGGGUCUGCAGUUGAUAUUUCGAAAGCUUGUAGCACCAUGAGAUUCAGCUCCGGUGUUGGUUCGUUUCCUAAGGAGAAGGG

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Structure

        10          20        30        40        50        60 
GGUAGCCGGCUAAAAAG--|         C  A     C        GU     GUUGAUAU 
                   AACCAAUACC GA CUGAA UCUCGUGG  CUGCA        U
                   UUGGUUGUGG CU GACUU AGAGUACC  GAUGU        U
GGGAAGAGGAAUCCUUUGC^         C  C     -        AC     UCGAAAGC 
 120       110       100        90         80        70

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

Ge	Ge	So	So	To	To	To

Star sequence

Aae-Mir-29-P2h_5p*

mirBase accession

None

Sequence

0- ACUGAACUCUCGUGGGUCUGCA -22

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Mature sequence

Aae-Mir-29-P2h_3p

mirBase accession

MIMAT0014227

Sequence

42- UAGCACCAUGAGAUUCAGCUC -63

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