MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-29-P2h

Family name MIR-29 (all species)
Seed AGCACCA
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-998
Paralogues Hme-Mir-29-P1 
Orthologues Aae-Mir-29-P2h  Aga-Mir-29-P2h  Agr-Mir-29-P2  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bge-Mir-29-P2h  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cte-Mir-29-P2  Dan-Mir-29-P2h  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dme-Mir-29-P2h  Dmo-Mir-29-P2h  Dpu-Mir-29-P2  Dsi-Mir-29-P2h  Dya-Mir-29-P2h  Eba-Mir-29-P2  Esc-Mir-29-P2  Gpa-Mir-29-P2h  Gsp-Mir-29  Hru-Mir-29-P2  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Mgi-Mir-29-P2  Mom-Mir-29-P2  Npo-Mir-29-P2  Obi-Mir-29-P2  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pau-Mir-29-P2  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sko-Mir-29-P2  Sme-Mir-29-o2  Spu-Mir-29-P2  Tca-Mir-29-P2h  War-Mir-29-P2  Xbo-Mir-29-P2 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Hmel_1)		 HE672080: 325259-325313 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2h)		 Mir-29-P2h HE672080: 325259-325313 [-] Ensembl
Mir-2-P7 HE672080: 326757-326812 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGGGCCAGUGUGGCACGGGGCGUCCCCGAGCUACAUCCCGUGGGGCUCCAGUCUGUGCGUGUAGCACCAUGGGAUUCAGCUCAGGGCGGCCGCGACUAACAUCUACUAACAUC
Get precursor sequence
Structure
        10           20        30        40        50       
AAAGGGCCAGUGUGGCA--  -| G  U   C     AC         G   C  GUCU 
                   CG GG CG CCC GAGCU  AUCCCGUGG GCU CA    \
                   GC CC GC GGG CUCGA  UAGGGUACC CGA GU    G
CUACAAUCAUCUACAAUCA  G^ G  -   A     CU         A   U  GCGU 
   110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-29-P2h_5p*
mirBase accessionNone
Sequence 
0- AGCUACAUCCCGUGGGGCUCCA -22
Get sequence
Mature sequence

Hme-Mir-29-P2h_3p
mirBase accessionMIMAT0025001
Sequence 
33- UAGCACCAUGGGAUUCAGCUCA -55
Get sequence