MirGeneDB ID | Gpa-Mir-29-P2h |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
Gpa-Mir-29-P1
Gpa-Mir-29-P2g
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Orthologues |
Aae-Mir-29-P2h
Aga-Mir-29-P2h
Agr-Mir-29-P2
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bge-Mir-29-P2h
Bla-Mir-29-P2
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cte-Mir-29-P2
Dan-Mir-29-P2h
Dgr-Mir-29-P2
Dma-Mir-29-P2
Dme-Mir-29-P2h
Dmo-Mir-29-P2h
Dpu-Mir-29-P2
Dsi-Mir-29-P2h
Dya-Mir-29-P2h
Eba-Mir-29-P2
Esc-Mir-29-P2
Gsp-Mir-29
Hme-Mir-29-P2h
Hru-Mir-29-P2
Lgi-Mir-29-P2
Lhy-Mir-29-P2
Llo-Mir-29-P2
Mgi-Mir-29-P2
Mom-Mir-29-P2
Npo-Mir-29-P2
Obi-Mir-29-P2
Ofu-Mir-29-P2
Ovu-Mir-29-P2
Pau-Mir-29-P2
Pcr-Mir-29-P2
Pdu-Mir-29-P2
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Pve-Mir-29-P2
Rph-Mir-29-P2
Sko-Mir-29-P2
Sme-Mir-29-o2
Spu-Mir-29-P2
Tca-Mir-29-P2h
War-Mir-29-P2
Xbo-Mir-29-P2
|
Node of Origin (locus) |
Neoptera
|
Node of Origin (family) |
Bilateria
|
Genome context (GpalI1) |
Scaffold391: 34785-34867 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAAAACUUUAAAAAUAAUUCAUUUUAGAACUGAAUUCUCGUGGGUCUGCAUAGCAUACCAUAUAUCGUGUGUACAGUAAUUGAAAAUUUGUAGCACCAUGAGAUUCAGCUCUGGCAUGAAUUUCAAUGCACACCACCACCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
AGAAAAACUUUAAAAAU--| U A U GU UAGCAUACCAUAUAUCGU
AAUUCAU UUAGA CUGAAU CUCGUGG CUGCA G
UUAAGUA GGUCU GACUUA GAGUACC GAUGU U
ACCACCACCACACGUAACU^ C C - AC UUAAAAGUUAAUGACAUG
140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Star sequence |
Gpa-Mir-29-P2h_5p* |
mirBase accession | None |
Sequence |
0- ACUGAAUUCUCGUGGGUCUGCA -22
Get sequence
|
Mature sequence |
Gpa-Mir-29-P2h_3p |
mirBase accession | None |
Sequence |
62- UAGCACCAUGAGAUUCAGCUC -83
Get sequence
|