MirGeneDB 2.1
MirGeneDB ID

Cte-Mir-29-P2

Family name MIR-29 (all species)
Seed AGCACCA
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-29a
Paralogues Cte-Mir-29-P1 
Orthologues Aae-Mir-29-P2h  Aca-Mir-29-P2b  Aca-Mir-29-P2d  Ami-Mir-29-P2b  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bge-Mir-29-P2g  Bge-Mir-29-P2h  Bla-Mir-29-P2  Bta-Mir-29-P2b  Bta-Mir-29-P2d1  Bta-Mir-29-P2d2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2b  Cli-Mir-29-P2d  Cmi-Mir-29-P2a-v1  Cmi-Mir-29-P2a-v2  Cmi-Mir-29-P2b  Cmi-Mir-29-P2d  Cpi-Mir-29-P2b  Cpi-Mir-29-P2d  Cpo-Mir-29-P2b  Cpo-Mir-29-P2d  Csc-Mir-29-P2  Dan-Mir-29-P2g  Dan-Mir-29-P2h  Dma-Mir-29-P2g  Dma-Mir-29-P2h  Dme-Mir-29-P2g  Dme-Mir-29-P2h  Dmo-Mir-29-P2g  Dmo-Mir-29-P2h  Dno-Mir-29-P2b  Dno-Mir-29-P2d  Dpu-Mir-29-P2g  Dpu-Mir-29-P2h  Dre-Mir-29-P2b1  Dre-Mir-29-P2d2  Dsi-Mir-29-P2g  Dsi-Mir-29-P2h  Dya-Mir-29-P2g  Dya-Mir-29-P2h  Ebu-Mir-29-P2e  Ebu-Mir-29-P2f  Efe-Mir-29-P2k  Efe-Mir-29-P2l  Esc-Mir-29-P2  Ete-Mir-29-P2b  Ete-Mir-29-P2d  Gga-Mir-29-P2b  Gga-Mir-29-P2d  Gja-Mir-29-P2b  Gja-Mir-29-P2d  Gmo-Mir-29-P2b1  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Hme-Mir-29-P2h  Hsa-Mir-29-P2b  Hsa-Mir-29-P2d  Isc-Mir-29-P2  Lan-Mir-29-P2i  Lan-Mir-29-P2j  Lch-Mir-29-P2a  Lch-Mir-29-P2b  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Loc-Mir-29-P2a  Loc-Mir-29-P2b  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Lpo-Mir-29-P2m  Lpo-Mir-29-P2n  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2b  Mdo-Mir-29-P2d  Mml-Mir-29-P2b  Mml-Mir-29-P2d  Mmu-Mir-29-P2b  Mmu-Mir-29-P2d  Mun-Mir-29-P2b  Mun-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2b  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ocu-Mir-29-P2d  Ovu-Mir-29-P2  Pbv-Mir-29-P2b  Pbv-Mir-29-P2d  Pfl-Mir-29-P2  Pma-Mir-29-P2o1  Pma-Mir-29-P2o2  Pmi-Mir-29-P2  Rno-Mir-29-P2b  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Sha-Mir-29-P2b  Sha-Mir-29-P2d  Sko-Mir-29-P2  Spt-Mir-29-P2b  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2b  Sto-Mir-29-P2d  Tca-Mir-29-P2g  Tca-Mir-29-P2h  Tgu-Mir-29-P2b  Tgu-Mir-29-P2d  Tni-Mir-29-P2b1  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2b  Xtr-Mir-29-P2d 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_794: 6889-6954 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2)		 Mir-29-P2 CAPTEscaffold_794: 6889-6954 [-] Ensembl
Mir-29-P1 CAPTEscaffold_794: 7597-7665 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUAUGCGCAUGAUAAUGGGGCUCUGGAAUCCUGGUUUUCUCUGGUGCAUAGAUUAACGCUUUGAAUUUGUGUCUAGCACCAUUUGAAAUCAGUUUUCCUGGGUGCUCACUCUCCUCUCACUUAAU
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Structure
        10         20         30        40        50        60   
AAUAUGCGCAUGAUAAU-   -|   U    UC        CUC      A    UUAACGCUU 
                  GGG GCUC GGAA  CUGGUUUU   UGGUGC UAGA         \
                  CUC UGGG CCUU  GACUAAAG   ACCACG AUCU         U
UAAUUCACUCUCCUCUCA   G^   U    UU        UUU      -    GUGUUUAAG 
    120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cte-Mir-29-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCUGGUUUUCUCUGGUGCAUAGA -23
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Mature sequence

Cte-Mir-29-P2_3p
mirBase accessionMIMAT0009513
Sequence 
44- UAGCACCAUUUGAAAUCAGUUU -66
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