MirGeneDB ID | Cfa-Mir-29-P2d8 |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Dog (Canis familiaris) |
MiRBase ID |
|
Paralogues |
Cfa-Mir-29-P1b-v1
Cfa-Mir-29-P1b-v2
Cfa-Mir-29-P1d-v1
Cfa-Mir-29-P1d-v2
Cfa-Mir-29-P2b
Cfa-Mir-29-P2d7
|
Orthologues |
Aca-Mir-29-P2d
Ami-Mir-29-P2d
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bla-Mir-29-P2
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cgi-Mir-29-P2
Cin-Mir-29-P2
Cli-Mir-29-P2d
Cmi-Mir-29-P2d
Cpi-Mir-29-P2d
Cpo-Mir-29-P2d
Csc-Mir-29-P2
Cte-Mir-29-P2
Dno-Mir-29-P2d
Esc-Mir-29-P2
Ete-Mir-29-P2d
Gga-Mir-29-P2d
Gja-Mir-29-P2d
Hsa-Mir-29-P2d
Isc-Mir-29-P2
Lch-Mir-29-P2d
Lgi-Mir-29-P2
Loc-Mir-29-P2d-v1
Loc-Mir-29-P2d-v2
Mdo-Mir-29-P2d
Mml-Mir-29-P2d
Mmu-Mir-29-P2d
Mun-Mir-29-P2d
Npo-Mir-29-P2
Oan-Mir-29-P2d
Obi-Mir-29-P2
Ocu-Mir-29-P2d
Ovu-Mir-29-P2
Pbv-Mir-29-P2d
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Sha-Mir-29-P2d
Sko-Mir-29-P2
Spt-Mir-29-P2d
Spu-Mir-29-P2
Sto-Mir-29-P2d
Tgu-Mir-29-P2d
Xbo-Mir-29-P2
Xtr-Mir-29-P2d
|
Node of Origin (locus) |
C. familiaris
|
Node of Origin (family) |
Bilateria
|
Genome context (canFam3_add) |
chr7: 6588010-6588067 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CACCACCGGACCCAUCUCUUACACAGGCUGACCGAUUUCUCCUGGUGUUCAGAGUCUGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAGCAGCCUCGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
CACCACCGGACCCAUCU---- -| GGC UCC C GUCUG
CUUACA CA UGACCGAUUUC UGGUGUU AGA \
GGAUGU GU AUUGGCUAAAG ACCACGA UCU U
AAGCUCCGACGACGAAAAGGG A^ --- UUU - GUUUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Star sequence |
Cfa-Mir-29-P2d8_5p* |
mirBase accession | None |
Sequence |
0- ACCGAUUUCUCCUGGUGUUCAGA -23
Get sequence
|
Mature sequence |
Cfa-Mir-29-P2d8_3p |
mirBase accession | None |
Sequence |
36- UAGCACCAUUUGAAAUCGGUUA -58
Get sequence
|