MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-29-P2d

Family name MIR-29 (all species)
Seed AGCACCA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-29-P1b  Cmi-Mir-29-P1d  Cmi-Mir-29-P2a-v1  Cmi-Mir-29-P2a-v2  Cmi-Mir-29-P2b 
Orthologues Aca-Mir-29-P2d  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2d1  Bta-Mir-29-P2d2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2d  Dre-Mir-29-P2d2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Hsa-Mir-29-P2d  Isc-Mir-29-P2  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2d  Mml-Mir-29-P2d  Mmu-Mir-29-P2d  Mun-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ovu-Mir-29-P2  Pbv-Mir-29-P2d  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Sha-Mir-29-P2d  Sko-Mir-29-P2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  Xbo-Mir-29-P2  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635924.1: 3565880-3565939 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGACCAACGCCAACCCUUUGCUCAGGGUGACUGAUUUCUUUUGGUGUUCAGAGUCUUGGUCGAUUUCUAGCACCAUUUGAAAUCGGUUACAAUGCAGAGGGAAACACAGCGAGAAUUGC
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Structure
        10            20        30        40        50          
CAGACCAACGCCAACCC----|    UCAGG            UUU       C   GUCUUG 
                     UUUGC     GUGACUGAUUUC   UGGUGUU AGA      \
                     AGACG     CAUUGGCUAAAG   ACCACGA UCU      G
CGUUAAGAGCGACACAAAGGG^    UAA--            UUU       -   UUAGCU 
.       110       100          90        80        70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Star sequence

Cmi-Mir-29-P2d_5p*
mirBase accessionNone
Sequence 
0- ACUGAUUUCUUUUGGUGUUCAGA -23
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Mature sequence

Cmi-Mir-29-P2d_3p
mirBase accessionNone
Sequence 
38- UAGCACCAUUUGAAAUCGGUUA -60
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