MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-29-P2d1

Family name MIR-29 (all species)
Seed AGCACCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-29a-3
Paralogues Gmo-Mir-29-P1b1  Gmo-Mir-29-P1b2  Gmo-Mir-29-P1d1  Gmo-Mir-29-P1d2  Gmo-Mir-29-P2b1  Gmo-Mir-29-P2d2 
Orthologues Aca-Mir-29-P2d  Agr-Mir-29-P2  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cja-Mir-29-P2d  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2d  Dpu-Mir-29-P2  Eba-Mir-29-P2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2d  Laf-Mir-29-P2d  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mal-Mir-29-P2d1  Mdo-Mir-29-P2d  Mgi-Mir-29-P2  Mml-Mir-29-P2d  Mmr-Mir-29-P2d  Mmu-Mir-29-P2d  Mom-Mir-29-P2  Mun-Mir-29-P2d  Neu-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2d  Pau-Mir-29-P2  Pbv-Mir-29-P2d  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rph-Mir-29-P2  Sha-Mir-29-P2d  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  War-Mir-29-P2  Xbo-Mir-29-P2  Xtr-Mir-29-P2d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_179: 149525-149583 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2d1)		 Mir-29-P1d1 GeneScaffold_179: 149124-149183 [+] UCSC Ensembl
Mir-29-P2d1 GeneScaffold_179: 149525-149583 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUAUAAUUAGCCCUCUUACCAAGGCUGACCGUUUUCUUCUGGUGUUUAGAGUUCAUUUAGUGUCUAGCACCAUUUGAAAUCGGUUACAAUGUAGAGGGACGAUCAUCUCUGGUGCC
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Structure
        10        20             30        40        50         
AAGCUAUAAUUAGCCCUCUUA  AAG-  ----|     U    UUC       U   GUUCA 
                     CC    GC    UGACCG UUUC   UGGUGUU AGA     U
                     GG    UG    AUUGGC AAAG   ACCACGA UCU     U
CCGUGGUCUCUACUAGCA---  GAGA  UAAC^     U    UUU       -   GUGAU 
       110          100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-29-P2d1_5p*
mirBase accessionMIMAT0044151
Sequence 
0- ACCGUUUUCUUCUGGUGUUUAGA -23
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Mature sequence

Gmo-Mir-29-P2d1_3p
mirBase accessionMIMAT0044073
Sequence 
37- UAGCACCAUUUGAAAUCGGUUA -59
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