MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-29-P2d

Family name MIR-29 (all species)
Seed AGCACCA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-29a-2
Paralogues Pbv-Mir-29-P1b-v1  Pbv-Mir-29-P1b-v2  Pbv-Mir-29-P1d-v1  Pbv-Mir-29-P1d-v2  Pbv-Mir-29-P2b 
Orthologues Aca-Mir-29-P2d  Ami-Mir-29-P2d  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2d1  Bta-Mir-29-P2d2  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2d  Cmi-Mir-29-P2d  Cpi-Mir-29-P2d  Cpo-Mir-29-P2d  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2d  Dre-Mir-29-P2d2  Esc-Mir-29-P2  Ete-Mir-29-P2d  Gga-Mir-29-P2d  Gja-Mir-29-P2d  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2  Hsa-Mir-29-P2d  Isc-Mir-29-P2  Lch-Mir-29-P2d  Lgi-Mir-29-P2  Loc-Mir-29-P2d-v1  Loc-Mir-29-P2d-v2  Mal-Mir-29-P2d1  Mal-Mir-29-P2d2  Mdo-Mir-29-P2d  Mml-Mir-29-P2d  Mmu-Mir-29-P2d  Mun-Mir-29-P2d  Npo-Mir-29-P2  Oan-Mir-29-P2d  Obi-Mir-29-P2  Ocu-Mir-29-P2d  Ovu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Rno-Mir-29-P2d5  Rno-Mir-29-P2d6  Sha-Mir-29-P2d  Sko-Mir-29-P2  Spt-Mir-29-P2d  Spu-Mir-29-P2  Sto-Mir-29-P2d  Tgu-Mir-29-P2d  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2  Xbo-Mir-29-P2  Xla-Mir-29-P2d3  Xla-Mir-29-P2d4  Xtr-Mir-29-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953855.1: 172399-172458 [+]
Clustered miRNAs
(< 50kb from Mir-29-P2d)
Mir-29-P1d-v1 KE953855.1: 171280-171344 [+]
Mir-29-P1d-v2 KE953855.1: 171281-171343 [+]
Mir-29-P2d KE953855.1: 172399-172458 [+]
Precursor
(pre-Mir +30nt flank)
GACCUGGGAAAACAUCUCUUACACAGGCUGACCGAUUUCUCUUGGUGUUCAGAGUCUUAGUUUUUGUCUAGCACCAUUUGAAAUCGGUUAUGAUGUAGGGGGAAAAGCAACUGCAGUGGA
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Structure
        10            20         30        40        50          
GACCUGGGAAAACAUCU----      -| GGC           UCU       C   GUCUUA 
                     CUUACA CA   UGACCGAUUUC   UGGUGUU AGA      \
                     GGAUGU GU   AUUGGCUAAAG   ACCACGA UCU      G
AGGUGACGUCAACGAAAAGGG      A^ ---           UUU       -   GUUUUU 
.       110       100           90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pbv-Mir-29-P2d_5p*

mirBase accessionMIMAT0038867
Sequence
0- ACCGAUUUCUCUUGGUGUUCAGA -23
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Mature sequence

Pbv-Mir-29-P2d_3p

mirBase accessionMIMAT0038866
Sequence
38- UAGCACCAUUUGAAAUCGGUUA -60
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