MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-29-P2

Family name

MIR-29 (all species)

Seed

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Rph-Mir-29-P1

Orthologues

Aae-Mir-29-P2h Aca-Mir-29-P2b Aca-Mir-29-P2d Aga-Mir-29-P2h Agr-Mir-29-P2 Ami-Mir-29-P2b Ami-Mir-29-P2d Asu-Mir-29-P2 Bfl-Mir-29-P2 Bge-Mir-29-P2g Bge-Mir-29-P2h Bla-Mir-29-P2 Bta-Mir-29-P2b Bta-Mir-29-P2d7 Bta-Mir-29-P2d8 Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cfa-Mir-29-P2d7 Cfa-Mir-29-P2d8 Cja-Mir-29-P2b Cja-Mir-29-P2d Cli-Mir-29-P2b Cli-Mir-29-P2d Cmi-Mir-29-P2a-v1 Cmi-Mir-29-P2a-v2 Cmi-Mir-29-P2b Cmi-Mir-29-P2d Cpi-Mir-29-P2b Cpi-Mir-29-P2d Cpo-Mir-29-P2b Cpo-Mir-29-P2d Cte-Mir-29-P2 Dan-Mir-29-P2g Dan-Mir-29-P2h Dgr-Mir-29-P2 Dma-Mir-29-P2 Dme-Mir-29-P2g Dme-Mir-29-P2h Dmo-Mir-29-P2g Dmo-Mir-29-P2h Dno-Mir-29-P2b Dno-Mir-29-P2d Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Dre-Mir-29-P2d2 Dsi-Mir-29-P2g Dsi-Mir-29-P2h Dya-Mir-29-P2g Dya-Mir-29-P2h Eba-Mir-29-P2 Ebu-Mir-29-P2e Ebu-Mir-29-P2f Eca-Mir-29-P2b-v1 Eca-Mir-29-P2b-v2 Eca-Mir-29-P2d7 Eca-Mir-29-P2d8 Efe-Mir-29-P2k Efe-Mir-29-P2l Esc-Mir-29-P2 Ete-Mir-29-P2b Ete-Mir-29-P2d Gga-Mir-29-P2b Gga-Mir-29-P2d Gja-Mir-29-P2b Gja-Mir-29-P2d Gmo-Mir-29-P2b1 Gmo-Mir-29-P2d1 Gmo-Mir-29-P2d2 Gpa-Mir-29-P2g Gpa-Mir-29-P2h Gsp-Mir-29 Hme-Mir-29-P2h Hru-Mir-29-P2 Hsa-Mir-29-P2b Hsa-Mir-29-P2d Laf-Mir-29-P2b Laf-Mir-29-P2d Lan-Mir-29-P2i Lan-Mir-29-P2j Lch-Mir-29-P2a Lch-Mir-29-P2b Lch-Mir-29-P2d Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2a Loc-Mir-29-P2b Loc-Mir-29-P2d-v1 Loc-Mir-29-P2d-v2 Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2b1-v2 Mal-Mir-29-P2d1 Mal-Mir-29-P2d2 Mdo-Mir-29-P2b Mdo-Mir-29-P2d Mgi-Mir-29-P2 Mml-Mir-29-P2b Mml-Mir-29-P2d Mmr-Mir-29-P2b-v1 Mmr-Mir-29-P2b-v2 Mmr-Mir-29-P2d Mmu-Mir-29-P2b Mmu-Mir-29-P2d Mom-Mir-29-P2 Mun-Mir-29-P2b Mun-Mir-29-P2d Neu-Mir-29-P2b Neu-Mir-29-P2d Npo-Mir-29-P2 Oan-Mir-29-P2b Oan-Mir-29-P2d Obi-Mir-29-P2 Ocu-Mir-29-P2b Ocu-Mir-29-P2d Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pab-Mir-29-P2d Pau-Mir-29-P2 Pbv-Mir-29-P2b Pbv-Mir-29-P2d Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pma-Mir-29-P2o1 Pma-Mir-29-P2o2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rno-Mir-29-P2d5 Rno-Mir-29-P2d6 Sha-Mir-29-P2b Sha-Mir-29-P2d Sko-Mir-29-P2 Sme-Mir-29-o2 Snu-Mir-29-P2q Snu-Mir-29-P2r Spt-Mir-29-P2b Spt-Mir-29-P2d Spu-Mir-29-P2 Sro-Mir-29-P2p1 Sro-Mir-29-P2p2 Sto-Mir-29-P2b Sto-Mir-29-P2d Tca-Mir-29-P2g Tca-Mir-29-P2h Tgu-Mir-29-P2b Tgu-Mir-29-P2d Tni-Mir-29-P2b1 Tni-Mir-29-P2d1 Tni-Mir-29-P2d2 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xla-Mir-29-P2d3 Xla-Mir-29-P2d4 Xtr-Mir-29-P2b Xtr-Mir-29-P2d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Ruditapes_GCA_009026015)

CM018527.1: 5214533-5214591 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAACAGAAGGAAGGGUCAUACCAAGAAGCCUGGUUUUCUAUGGUGAAAAGAGUGAGCAAUGUUUCUAGCACCAUUUGAAAUCAGAUUUCCUGUAUGACAUCUCAACAUACAAUGACU

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Structure

        10           20        30        40        50         
UGGAACAGAAGGAAGGG---|     CAA   GC        CU      AAA   GUGAG 
                    UCAUAC   GAA  CUGGUUUU  AUGGUG   AGA     C
                    AGUAUG   CUU  GACUAAAG  UACCAC   UCU     A
UCAGUAACAUACAACUCUAC^     UC-   UA        UU      GA-   UUGUA 
       110       100         90        80        70         60

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

-

+

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Star sequence

Rph-Mir-29-P2_5p*

mirBase accession

None

Sequence

0- CCUGGUUUUCUAUGGUGAAAAGA -23

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Mature sequence

Rph-Mir-29-P2_3p

mirBase accession

None

Sequence

37- UAGCACCAUUUGAAAUCAGAUU -59

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