MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-29-P2b

Family name MIR-29 (all species)
Seed AGCACCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-29a
Paralogues Xtr-Mir-29-P1b-v1  Xtr-Mir-29-P1b-v2  Xtr-Mir-29-P1d  Xtr-Mir-29-P2d 
Orthologues Aca-Mir-29-P2b  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2b  Dre-Mir-29-P2b1  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Hsa-Mir-29-P2b  Isc-Mir-29-P2  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Loc-Mir-29-P2b  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mdo-Mir-29-P2b  Mml-Mir-29-P2b  Mmu-Mir-29-P2b  Mun-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ovu-Mir-29-P2  Pbv-Mir-29-P2b  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Rno-Mir-29-P2b  Sha-Mir-29-P2b  Sko-Mir-29-P2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Tni-Mir-29-P2b1  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr3: 75124890-75124947 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b)
Mir-29-P2b chr3: 75124890-75124947 [-] UCSC Ensembl
Mir-29-P1b-v1 chr3: 75127548-75127611 [-] UCSC Ensembl
Mir-29-P1b-v2 chr3: 75127549-75127610 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUGGAUCAUUGCACCCUUUUAAAGGAUGACUGAUUUCUUCUGGUGUUCAGAGUCUUUUGUUUUCUAGCACCAUUUGAAAUCGGUUAUAAUGAUGGGGUAAAAAUUCAGCCUGCUGU
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Structure
        10          20        30        40        50         
UAAUGGAUCAUUGCACC--|   UAAAGG            UUC       C   GUCUU 
                   CUUU      AUGACUGAUUUC   UGGUGUU AGA     \
                   GGGG      UAUUGGCUAAAG   ACCACGA UCU     U
UGUCGUCCGACUUAAAAAU^   UAGUAA            UUU       -   UUUGU 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-29-P2b_5p*

mirBase accessionNone
Sequence
0- ACUGAUUUCUUCUGGUGUUCAGA -23
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Mature sequence

Xtr-Mir-29-P2b_3p

mirBase accessionMIMAT0003656
Sequence
36- UAGCACCAUUUGAAAUCGGUUA -58
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Proposed targets TargetScanVert: xtr-miR-29a