Mir-29-P2b1-v1

MirGeneDB ID

Mal-Mir-29-P2b1-v1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-29-P1b1-v1 Mal-Mir-29-P1b1-v2 Mal-Mir-29-P1b2-v1 Mal-Mir-29-P1b2-v2 Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mal-Mir-29-P1d2-v2 Mal-Mir-29-P2b1-v2 Mal-Mir-29-P2d1 Mal-Mir-29-P2d2

Orthologues

Aca-Mir-29-P2b Agr-Mir-29-P2 Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cja-Mir-29-P2b Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2b Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Eba-Mir-29-P2 Eca-Mir-29-P2b-v1 Eca-Mir-29-P2b-v2 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2b Laf-Mir-29-P2b Lch-Mir-29-P2b Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2b Mdo-Mir-29-P2b Mgi-Mir-29-P2 Mml-Mir-29-P2b Mmr-Mir-29-P2b-v1 Mmr-Mir-29-P2b-v2 Mmu-Mir-29-P2b Mom-Mir-29-P2 Mun-Mir-29-P2b Neu-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pau-Mir-29-P2 Pbv-Mir-29-P2b Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rph-Mir-29-P2 Sha-Mir-29-P2b Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 War-Mir-29-P2 Xbo-Mir-29-P2 Xtr-Mir-29-P2b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884739.1: 6343485-6343545 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCUACUCUUCUUUCACCACCAAAAGAUAACUGAUUUCUUCUGGUGCUUAGAGCUCACUACAGCCUUCUAGCACCAUUUGAAAUCGGUUAUAAAACUGUGGAUCAGUGCGUCUGUCAAUC

Get precursor sequence

Structure

        10          20        30        40        50        60
CUCCUACUCUUCUUUCA--|   CAAAAG            UUC       U   GCUCAC 
                   CCAC      AUAACUGAUUUC   UGGUGCU AGA      U
                   GGUG      UAUUGGCUAAAG   ACCACGA UCU      A
CUAACUGUCUGCGUGACUA^   UCAAAA            UUU       -   UCCGAC 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-29-P2b1-v1_5p*

mirBase accession

None

Sequence

0- ACUGAUUUCUUCUGGUGCUUAGA -23

Get sequence

Mature sequence

Mal-Mir-29-P2b1-v1_3p

mirBase accession

None

Sequence

39- UAGCACCAUUUGAAAUCGGUUA -61

Get sequence