Mir-29-P2b-v1

MirGeneDB ID

Eca-Mir-29-P2b-v1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-29a

Paralogues

Eca-Mir-29-P1b-v1 Eca-Mir-29-P1b-v2 Eca-Mir-29-P1d-v1 Eca-Mir-29-P1d-v2 Eca-Mir-29-P2b-v2 Eca-Mir-29-P2d7 Eca-Mir-29-P2d8

Orthologues

Aca-Mir-29-P2b Agr-Mir-29-P2 Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cja-Mir-29-P2b Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2b Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Eba-Mir-29-P2 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gmo-Mir-29-P2b1 Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2b Laf-Mir-29-P2b Lch-Mir-29-P2b Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2b Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2b1-v2 Mdo-Mir-29-P2b Mgi-Mir-29-P2 Mml-Mir-29-P2b Mmr-Mir-29-P2b-v1 Mmr-Mir-29-P2b-v2 Mmu-Mir-29-P2b Mom-Mir-29-P2 Mun-Mir-29-P2b Neu-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pau-Mir-29-P2 Pbv-Mir-29-P2b Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rph-Mir-29-P2 Sha-Mir-29-P2b Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 War-Mir-29-P2 Xbo-Mir-29-P2 Xla-Mir-29-P2b3 Xla-Mir-29-P2b4 Xtr-Mir-29-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009151.1: 85442663-85442722 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2b-v1)

Mir-29-P2b-v1 CM009151.1: 85442663-85442722 [-] UCSC Ensembl
Mir-29-P2b-v2 CM009151.1: 85442663-85442722 [-] UCSC Ensembl
Mir-29-P1b-v1 CM009151.1: 85443049-85443112 [-] UCSC Ensembl
Mir-29-P1b-v2 CM009151.1: 85443050-85443111 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACAAGUCCUCCUGUGACCCCUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCAAUAUAAUUUUCUAGCACCAUCUGAAAUCGGUUAUAAUGAUGGGGGAAGAGCACCGUGCAGCCG

Get precursor sequence

Structure

        10         20         30        40        50          
ACAAGUCCUCCUGUGAC-      GAGG-|           UUU       C   GUCAAU 
                  CCCUUA     AUGACUGAUUUC   UGGUGUU AGA      \
                  GGGGGU     UAUUGGCUAAAG   ACCACGA UCU      A
GCCGACGUGCCACGAGAA      AGUAA^           UCU       -   UUUAAU 
.       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-29-P2b-v1_5p*

mirBase accession

None

Sequence

0- ACUGAUUUCUUUUGGUGUUCAGA -23

Get sequence

Mature sequence

Eca-Mir-29-P2b-v1_3p

mirBase accession

MIMAT0012940

Sequence

38- UAGCACCAUCUGAAAUCGGUUA -60

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