MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-29-P2b

Family name MIR-29 (all species)
Seed AGCACCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-29a-1
Paralogues Ami-Mir-29-P1b-v1  Ami-Mir-29-P1b-v2  Ami-Mir-29-P1d-v1  Ami-Mir-29-P1d-v2  Ami-Mir-29-P2d 
Orthologues Aca-Mir-29-P2b  Agr-Mir-29-P2  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cja-Mir-29-P2b  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Cte-Mir-29-P2  Dgr-Mir-29-P2  Dma-Mir-29-P2  Dno-Mir-29-P2b  Dpu-Mir-29-P2  Dre-Mir-29-P2b1  Eba-Mir-29-P2  Eca-Mir-29-P2b-v1  Eca-Mir-29-P2b-v2  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Gmo-Mir-29-P2b1  Gsp-Mir-29  Hru-Mir-29-P2  Hsa-Mir-29-P2b  Laf-Mir-29-P2b  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Lhy-Mir-29-P2  Llo-Mir-29-P2  Loc-Mir-29-P2b  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mdo-Mir-29-P2b  Mgi-Mir-29-P2  Mml-Mir-29-P2b  Mmr-Mir-29-P2b-v1  Mmr-Mir-29-P2b-v2  Mmu-Mir-29-P2b  Mom-Mir-29-P2  Mun-Mir-29-P2b  Neu-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ofu-Mir-29-P2  Ovu-Mir-29-P2  Pab-Mir-29-P2b  Pau-Mir-29-P2  Pbv-Mir-29-P2b  Pcr-Mir-29-P2  Pdu-Mir-29-P2  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Pve-Mir-29-P2  Rno-Mir-29-P2b  Rph-Mir-29-P2  Sha-Mir-29-P2b  Sko-Mir-29-P2  Sme-Mir-29-o2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Tni-Mir-29-P2b1  War-Mir-29-P2  Xbo-Mir-29-P2  Xla-Mir-29-P2b3  Xla-Mir-29-P2b4  Xtr-Mir-29-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709854.1: 24295656-24295715 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-29-P2b)		 Mir-29-P2b NW_017709854.1: 24295656-24295715 [-] UCSC
Mir-29-P1b-v1 NW_017709854.1: 24298584-24298647 [-] UCSC
Mir-29-P1b-v2 NW_017709854.1: 24298585-24298646 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UACAGGUCUCAGUAACCCCUUUAGAGGAUGACUGAUUUCUUUUGGUGUUCAGAGUCCAUACUAUUUUCUAGCACCAUUUGAAAUCGGUUAUAGUGAUUGGGGAAUUGCACCGUGUGAAUU
Get precursor sequence
Structure
        10          20        30        40        50          
UACAGGUCUCAGUAACC--|  UUAGAGG            UUU       C   GUCCAU 
                   CCU       AUGACUGAUUUC   UGGUGUU AGA      \
                   GGG       UAUUGGCUAAAG   ACCACGA UCU      A
UUAAGUGUGCCACGUUAAG^  UUAGUGA            UUU       -   UUUAUC 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-29-P2b_5p*
mirBase accessionMIMAT0038071
Sequence 
0- ACUGAUUUCUUUUGGUGUUCAGA -23
Get sequence
Mature sequence

Ami-Mir-29-P2b_3p
mirBase accessionMIMAT0038072
Sequence 
38- UAGCACCAUUUGAAAUCGGUUA -60
Get sequence