MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-29-P1d-v1

Family name MIR-29 (all species)
Seed AGCACCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-29b-2
Paralogues Ami-Mir-29-P1b-v1  Ami-Mir-29-P1b-v2  Ami-Mir-29-P1d-v2  Ami-Mir-29-P2b  Ami-Mir-29-P2d 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1d-v1  Aca-Mir-29-P1d-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1d7-v1  Bta-Mir-29-P1d7-v2  Bta-Mir-29-P1d8-v1  Bta-Mir-29-P1d8-v2  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1d-v1  Cfa-Mir-29-P1d-v2  Cgi-Mir-29-P1  Cli-Mir-29-P1d-v1  Cli-Mir-29-P1d-v2  Cmi-Mir-29-P1d  Cpi-Mir-29-P1d-v1  Cpi-Mir-29-P1d-v2  Cpo-Mir-29-P1d-v1  Cpo-Mir-29-P1d-v2  Cte-Mir-29-P1  Dan-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1d-v1  Dno-Mir-29-P1d-v2  Dre-Mir-29-P1d1  Dre-Mir-29-P1d2  Dsi-Mir-29-P1  Dya-Mir-29-P1  Esc-Mir-29-P1  Ete-Mir-29-P1d-v1  Ete-Mir-29-P1d-v2  Gga-Mir-29-P1d-v1  Gga-Mir-29-P1d-v2  Gja-Mir-29-P1d-v1  Gja-Mir-29-P1d-v2  Gmo-Mir-29-P1d1  Gmo-Mir-29-P1d2  Hme-Mir-29-P1  Hsa-Mir-29-P1d-v1  Hsa-Mir-29-P1d-v2  Lch-Mir-29-P1d  Loc-Mir-29-P1d  Mal-Mir-29-P1d1  Mal-Mir-29-P1d2-v1  Mal-Mir-29-P1d2-v2  Mdo-Mir-29-P1d-v1  Mdo-Mir-29-P1d-v2  Mml-Mir-29-P1d-v1  Mml-Mir-29-P1d-v2  Mmu-Mir-29-P1d-v1  Mmu-Mir-29-P1d-v2  Mun-Mir-29-P1d-v1  Mun-Mir-29-P1d-v2  Npo-Mir-29-P1  Oan-Mir-29-P1d-v1  Oan-Mir-29-P1d-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1d-v1  Ocu-Mir-29-P1d-v2  Ovu-Mir-29-P1  Pbv-Mir-29-P1d-v1  Pbv-Mir-29-P1d-v2  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Rno-Mir-29-P1d5-v1  Rno-Mir-29-P1d5-v2  Rno-Mir-29-P1d6-v1  Rno-Mir-29-P1d6-v2  Sha-Mir-29-P1d-v1  Sha-Mir-29-P1d-v2  Sko-Mir-29-P1  Spt-Mir-29-P1d  Spu-Mir-29-P1  Sto-Mir-29-P1d  Tca-Mir-29-P1  Tgu-Mir-29-P1d-v1  Tgu-Mir-29-P1d-v2  Tni-Mir-29-P1d1  Tni-Mir-29-P1d2  Xbo-Mir-29-P1  Xla-Mir-29-P1d3  Xla-Mir-29-P1d4  Xtr-Mir-29-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713418.1: 1060963-1061027 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-29-P1d-v1)
Mir-29-P1d-v1 NW_017713418.1: 1060963-1061027 [+] UCSC
Mir-29-P1d-v2 NW_017713418.1: 1060964-1061026 [+] UCSC
Mir-29-P2d NW_017713418.1: 1061842-1061901 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUAUGCAAGGAGAUGAGUCUUCCUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUCCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUCUAGGGGCAAGAAUUACAGCGUGGGAAGAG
Get precursor sequence
Structure
        10         20         30         40        50        60  
CUAUGCAAGGAGAUGAG-    -         -|         C      G  U   UUUUCCC 
                  UCUU CCUCUGGAA GCUGGUUUCA AUGGUG CU AGA       A
                  AGAA GGGGAUCUU UGACUAAAGU UACCAC GA UCU       U
GAGAAGGGUGCGACAUUA    C         G^         U      -  -   AUGUUUC 
   120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-29-P1d-v1_5p* (predicted)

mirBase accessionMIMAT0038076
Sequence
0- GCUGGUUUCACAUGGUGGCUUAGA -24
Get sequence
Mature sequence

Ami-Mir-29-P1d-v1_3p

mirBase accessionMIMAT0038075
Sequence
42- UAGCACCAUUUGAAAUCAGUGUU -65
Get sequence