MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-29-P1d2

Family name MIR-29 (all species)
Seed AGCACCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-29b-2
Paralogues Tni-Mir-29-P1b1  Tni-Mir-29-P1b2  Tni-Mir-29-P1d1  Tni-Mir-29-P2b1  Tni-Mir-29-P2d1  Tni-Mir-29-P2d2 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1d-v1  Aca-Mir-29-P1d-v2  Ami-Mir-29-P1d-v1  Ami-Mir-29-P1d-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1d-v1  Cfa-Mir-29-P1d-v2  Cgi-Mir-29-P1  Cli-Mir-29-P1d-v1  Cli-Mir-29-P1d-v2  Cmi-Mir-29-P1d  Cpi-Mir-29-P1d-v1  Cpi-Mir-29-P1d-v2  Cpo-Mir-29-P1d-v1  Cpo-Mir-29-P1d-v2  Cte-Mir-29-P1  Dan-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1d-v1  Dno-Mir-29-P1d-v2  Dre-Mir-29-P1d2  Dsi-Mir-29-P1  Dya-Mir-29-P1  Esc-Mir-29-P1  Ete-Mir-29-P1d-v1  Ete-Mir-29-P1d-v2  Gga-Mir-29-P1d-v1  Gga-Mir-29-P1d-v2  Gja-Mir-29-P1d-v1  Gja-Mir-29-P1d-v2  Gmo-Mir-29-P1d2  Hme-Mir-29-P1  Hsa-Mir-29-P1d-v1  Hsa-Mir-29-P1d-v2  Lch-Mir-29-P1d  Loc-Mir-29-P1d  Mal-Mir-29-P1d2-v1  Mal-Mir-29-P1d2-v2  Mdo-Mir-29-P1d-v1  Mdo-Mir-29-P1d-v2  Mml-Mir-29-P1d-v1  Mml-Mir-29-P1d-v2  Mmu-Mir-29-P1d-v1  Mmu-Mir-29-P1d-v2  Mun-Mir-29-P1d-v1  Mun-Mir-29-P1d-v2  Npo-Mir-29-P1  Oan-Mir-29-P1d-v1  Oan-Mir-29-P1d-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1d-v1  Ocu-Mir-29-P1d-v2  Ovu-Mir-29-P1  Pbv-Mir-29-P1d-v1  Pbv-Mir-29-P1d-v2  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Sha-Mir-29-P1d-v1  Sha-Mir-29-P1d-v2  Sko-Mir-29-P1  Spt-Mir-29-P1d  Spu-Mir-29-P1  Sto-Mir-29-P1d  Tca-Mir-29-P1  Tgu-Mir-29-P1d-v1  Tgu-Mir-29-P1d-v2  Xbo-Mir-29-P1  Xtr-Mir-29-P1d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 9: 9583207-9583267 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1d2)		 Mir-29-P1d2 9: 9583207-9583267 [+] UCSC Ensembl
Mir-29-P2d2 9: 9583409-9583468 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGGAUUUUCUCGAGUGCCCCUCUUGGAAGCUGGUUUCAGGUGGUGGCUUAGAGUAUUGUCAUCUAUCUAGCACCAUUUGAAAUCAGUGUUCUUGGGGUGGGAGGUGUACUUUCUUACUG
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Structure
        10        20         30         40        50        60 
GCUGGAUUUUCUCGAGUG   -    U    -|                G  U   GUAUUG 
                  CCC CUCU GGAA GCUGGUUUCAGGUGGUG CU AGA      \
                  GGG GGGG UCUU UGACUAAAGUUUACCAC GA UCU      U
GUCAUUCUUUCAUGUGGA   U    U    G^                -  -   AUCUAC 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-29-P1d2_5p*
mirBase accessionNone
Sequence 
0- GCUGGUUUCAGGUGGUGGCUUAGA -24
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Mature sequence

Tni-Mir-29-P1d2_3p
mirBase accessionMIMAT0003056
Sequence 
39- UAGCACCAUUUGAAAUCAGUGU -61
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