MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-29-P1d-v1

Family name MIR-29 (all species)
Seed AGCACCA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-29b-2
Paralogues Cfa-Mir-29-P1b-v1  Cfa-Mir-29-P1b-v2  Cfa-Mir-29-P1d-v2  Cfa-Mir-29-P2b  Cfa-Mir-29-P2d7  Cfa-Mir-29-P2d8 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1d-v1  Aca-Mir-29-P1d-v2  Aga-Mir-29-P1  Agr-Mir-29-P1  Ami-Mir-29-P1d-v1  Ami-Mir-29-P1d-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Bta-Mir-29-P1d7-v1  Bta-Mir-29-P1d7-v2  Bta-Mir-29-P1d8-v1  Bta-Mir-29-P1d8-v2  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cin-Mir-29-o1  Cja-Mir-29-P1d-v1  Cja-Mir-29-P1d-v2  Cli-Mir-29-P1d-v1  Cli-Mir-29-P1d-v2  Cmi-Mir-29-P1d  Cpi-Mir-29-P1d-v1  Cpi-Mir-29-P1d-v2  Cpo-Mir-29-P1d-v1  Cpo-Mir-29-P1d-v2  Csc-Mir-29-P1  Cte-Mir-29-P1  Dan-Mir-29-P1  Dgr-Mir-29-P1  Dlo-Mir-29-P1  Dma-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1d-v1  Dno-Mir-29-P1d-v2  Dpu-Mir-29-P1  Dre-Mir-29-P1d1  Dre-Mir-29-P1d2  Dsi-Mir-29-P1  Dya-Mir-29-P1  Eba-Mir-29-P1  Eca-Mir-29-P1d-v1  Eca-Mir-29-P1d-v2  Esc-Mir-29-P1  Ete-Mir-29-P1d-v1  Ete-Mir-29-P1d-v2  Gga-Mir-29-P1d-v1  Gga-Mir-29-P1d-v2  Gja-Mir-29-P1d-v1  Gja-Mir-29-P1d-v2  Gmo-Mir-29-P1d1  Gmo-Mir-29-P1d2  Gpa-Mir-29-P1  Gsp-Mir-29  Hme-Mir-29-P1  Hru-Mir-29-P1  Hsa-Mir-29-P1d-v1  Hsa-Mir-29-P1d-v2  Isc-Mir-29-P1  Laf-Mir-29-P1d-v1  Laf-Mir-29-P1d-v2  Lch-Mir-29-P1d  Lhy-Mir-29-P1  Llo-Mir-29-P1  Loc-Mir-29-P1d  Mal-Mir-29-P1d1  Mal-Mir-29-P1d2-v1  Mal-Mir-29-P1d2-v2  Mdo-Mir-29-P1d-v1  Mdo-Mir-29-P1d-v2  Mgi-Mir-29-P1  Mml-Mir-29-P1d-v1  Mml-Mir-29-P1d-v2  Mmr-Mir-29-P1d-v1  Mmr-Mir-29-P1d-v2  Mmu-Mir-29-P1d-v1  Mmu-Mir-29-P1d-v2  Mom-Mir-29-P1  Mun-Mir-29-P1d-v1  Mun-Mir-29-P1d-v2  Npo-Mir-29-P1  Oan-Mir-29-P1d-v1  Oan-Mir-29-P1d-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1d-v1  Ocu-Mir-29-P1d-v2  Ofu-Mir-29-P1  Ovu-Mir-29-P1  Pab-Mir-29-P1d-v1  Pab-Mir-29-P1d-v2  Pau-Mir-29-P1  Pbv-Mir-29-P1d-v1  Pbv-Mir-29-P1d-v2  Pcr-Mir-29-P1  Pdu-Mir-29-P1  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Pve-Mir-29-P1  Rno-Mir-29-P1d5-v1  Rno-Mir-29-P1d5-v2  Rno-Mir-29-P1d6-v1  Rno-Mir-29-P1d6-v2  Rph-Mir-29-P1  Sha-Mir-29-P1d-v1  Sha-Mir-29-P1d-v2  Sko-Mir-29-P1  Snu-Mir-29-P1  Spt-Mir-29-P1d  Spu-Mir-29-P1  Sto-Mir-29-P1d  Tca-Mir-29-P1  Tgu-Mir-29-P1d-v1  Tgu-Mir-29-P1d-v2  Tni-Mir-29-P1d1  Tni-Mir-29-P1d2  Tur-Mir-29-P1  War-Mir-29-P1  Xbo-Mir-29-P1  Xla-Mir-29-P1d3  Xla-Mir-29-P1d4  Xtr-Mir-29-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(canFam3_add)		 chr7: 6651878-6651942 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1d-v1)		 Mir-29-P1d-v1 chr7: 6651878-6651942 [-] UCSC Ensembl
Mir-29-P1d-v2 chr7: 6651879-6651941 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCUUCAGUGAGAUCCUCUUCUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCCAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAGUAAGAAUUGCAGCGCAGCAGAGG
Get precursor sequence
Structure
        10         20         30         40        50        60  
UCUCUUCAGUGAGAUCC-    -         -|         C      G  U   UUUUUCC 
                  UCUU CUUCUGGAA GCUGGUUUCA AUGGUG CU AGA       A
                  AGAA GAGGAUUUU UGACUAAAGU UACCAC GA UCU       U
GGAGACGACGCGACGUUA    U         G^         U      -  -   AUGUUUC 
   120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-29-P1d-v1_5p*
mirBase accessionNone
Sequence 
0- GCUGGUUUCACAUGGUGGCUUAGA -24
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Mature sequence

Cfa-Mir-29-P1d-v1_3p
mirBase accessionMIMAT0006625
Sequence 
42- UAGCACCAUUUGAAAUCAGUGUU -65
Get sequence
Proposed targets TargetScanVert: cfa-miR-29b
miRDB: MIMAT0006625