Mir-29-P1d-v1

MirGeneDB ID

Cpo-Mir-29-P1d-v1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-29b-2

Paralogues

Cpo-Mir-29-P1b-v1 Cpo-Mir-29-P1b-v2 Cpo-Mir-29-P1d-v2 Cpo-Mir-29-P2b Cpo-Mir-29-P2d

Orthologues

Aae-Mir-29-P1 Aca-Mir-29-P1d-v1 Aca-Mir-29-P1d-v2 Aga-Mir-29-P1 Agr-Mir-29-P1 Ami-Mir-29-P1d-v1 Ami-Mir-29-P1d-v2 Asu-Mir-29-P1 Bfl-Mir-29-P1 Bla-Mir-29-P1 Bta-Mir-29-P1d7-v1 Bta-Mir-29-P1d7-v2 Bta-Mir-29-P1d8-v1 Bta-Mir-29-P1d8-v2 Cbr-Mir-29-P1 Cel-Mir-29-P1 Cfa-Mir-29-P1d-v1 Cfa-Mir-29-P1d-v2 Cin-Mir-29-o1 Cja-Mir-29-P1d-v1 Cja-Mir-29-P1d-v2 Cli-Mir-29-P1d-v1 Cli-Mir-29-P1d-v2 Cmi-Mir-29-P1d Cpi-Mir-29-P1d-v1 Cpi-Mir-29-P1d-v2 Csc-Mir-29-P1 Cte-Mir-29-P1 Dan-Mir-29-P1 Dgr-Mir-29-P1 Dlo-Mir-29-P1 Dma-Mir-29-P1 Dme-Mir-29-P1 Dmo-Mir-29-P1 Dno-Mir-29-P1d-v1 Dno-Mir-29-P1d-v2 Dpu-Mir-29-P1 Dre-Mir-29-P1d1 Dre-Mir-29-P1d2 Dsi-Mir-29-P1 Dya-Mir-29-P1 Eba-Mir-29-P1 Eca-Mir-29-P1d-v1 Eca-Mir-29-P1d-v2 Esc-Mir-29-P1 Ete-Mir-29-P1d-v1 Ete-Mir-29-P1d-v2 Gga-Mir-29-P1d-v1 Gga-Mir-29-P1d-v2 Gja-Mir-29-P1d-v1 Gja-Mir-29-P1d-v2 Gmo-Mir-29-P1d1 Gmo-Mir-29-P1d2 Gpa-Mir-29-P1 Gsp-Mir-29 Hme-Mir-29-P1 Hru-Mir-29-P1 Hsa-Mir-29-P1d-v1 Hsa-Mir-29-P1d-v2 Isc-Mir-29-P1 Laf-Mir-29-P1d-v1 Laf-Mir-29-P1d-v2 Lch-Mir-29-P1d Lhy-Mir-29-P1 Llo-Mir-29-P1 Loc-Mir-29-P1d Mal-Mir-29-P1d1 Mal-Mir-29-P1d2-v1 Mal-Mir-29-P1d2-v2 Mdo-Mir-29-P1d-v1 Mdo-Mir-29-P1d-v2 Mgi-Mir-29-P1 Mml-Mir-29-P1d-v1 Mml-Mir-29-P1d-v2 Mmr-Mir-29-P1d-v1 Mmr-Mir-29-P1d-v2 Mmu-Mir-29-P1d-v1 Mmu-Mir-29-P1d-v2 Mom-Mir-29-P1 Mun-Mir-29-P1d-v1 Mun-Mir-29-P1d-v2 Npo-Mir-29-P1 Oan-Mir-29-P1d-v1 Oan-Mir-29-P1d-v2 Obi-Mir-29-P1 Ocu-Mir-29-P1d-v1 Ocu-Mir-29-P1d-v2 Ofu-Mir-29-P1 Ovu-Mir-29-P1 Pab-Mir-29-P1d-v1 Pab-Mir-29-P1d-v2 Pau-Mir-29-P1 Pbv-Mir-29-P1d-v1 Pbv-Mir-29-P1d-v2 Pcr-Mir-29-P1 Pdu-Mir-29-P1 Pfl-Mir-29-P1 Pmi-Mir-29-P1 Pve-Mir-29-P1 Rno-Mir-29-P1d5-v1 Rno-Mir-29-P1d5-v2 Rno-Mir-29-P1d6-v1 Rno-Mir-29-P1d6-v2 Rph-Mir-29-P1 Sha-Mir-29-P1d-v1 Sha-Mir-29-P1d-v2 Sko-Mir-29-P1 Snu-Mir-29-P1 Spt-Mir-29-P1d Spu-Mir-29-P1 Sto-Mir-29-P1d Tca-Mir-29-P1 Tgu-Mir-29-P1d-v1 Tgu-Mir-29-P1d-v2 Tni-Mir-29-P1d1 Tni-Mir-29-P1d2 Tur-Mir-29-P1 War-Mir-29-P1 Xbo-Mir-29-P1 Xla-Mir-29-P1d3 Xla-Mir-29-P1d4 Xtr-Mir-29-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(cavPor3)

scaffold_12: 15329413-15329477 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-29-P1d-v1)

Mir-29-P1d-v1 scaffold_12: 15329413-15329477 [+] UCSC
Mir-29-P1d-v2 scaffold_12: 15329414-15329476 [+] UCSC
Mir-29-P2d scaffold_12: 15329893-15329950 [+] UCSC

Precursor
(pre-Mir +30nt flank)

UUUCUUCAGUGAGACCCUCUUCUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAUUUUUCGAUCUUUGUAUCUAGCACCAUUUGAAAUCAGUGUUUUAGGAGUAAGAAUUGCAGCGGCACAAGGG

Get precursor sequence

Structure

        10         20         30         40        50        60  
UUUCUUCAGUGAGACCC-    -         -|         C      G  U   UUUUUCG 
                  UCUU CUUCUGGAA GCUGGUUUCA AUGGUG CU AGA       A
                  AGAA GAGGAUUUU UGACUAAAGU UACCAC GA UCU       U
GGGAACACGGCGACGUUA    U         G^         U      -  -   AUGUUUC 
   120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-29-P1d-v1_5p*

mirBase accession

MIMAT0046900

Sequence

0- GCUGGUUUCACAUGGUGGCUUAGA -24

Get sequence

Mature sequence

Cpo-Mir-29-P1d-v1_3p

mirBase accession

MIMAT0046899

Sequence

42- UAGCACCAUUUGAAAUCAGUGUU -65

Get sequence