MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-29-P1d1

Family name MIR-29 (all species)
Seed AGCACCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-29d
Paralogues Gmo-Mir-29-P1b1  Gmo-Mir-29-P1b2  Gmo-Mir-29-P1d2  Gmo-Mir-29-P2b1  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2 
Orthologues Aae-Mir-29-P1  Aca-Mir-29-P1d-v1  Aca-Mir-29-P1d-v2  Ami-Mir-29-P1d-v1  Ami-Mir-29-P1d-v2  Asu-Mir-29-P1  Bfl-Mir-29-P1  Bla-Mir-29-P1  Cbr-Mir-29-P1  Cel-Mir-29-P1  Cfa-Mir-29-P1d-v1  Cfa-Mir-29-P1d-v2  Cgi-Mir-29-P1  Cli-Mir-29-P1d-v1  Cli-Mir-29-P1d-v2  Cmi-Mir-29-P1d  Cpi-Mir-29-P1d-v1  Cpi-Mir-29-P1d-v2  Cpo-Mir-29-P1d-v1  Cpo-Mir-29-P1d-v2  Cte-Mir-29-P1  Dan-Mir-29-P1  Dme-Mir-29-P1  Dmo-Mir-29-P1  Dno-Mir-29-P1d-v1  Dno-Mir-29-P1d-v2  Dre-Mir-29-P1d1  Dsi-Mir-29-P1  Dya-Mir-29-P1  Esc-Mir-29-P1  Ete-Mir-29-P1d-v1  Ete-Mir-29-P1d-v2  Gga-Mir-29-P1d-v1  Gga-Mir-29-P1d-v2  Gja-Mir-29-P1d-v1  Gja-Mir-29-P1d-v2  Hme-Mir-29-P1  Hsa-Mir-29-P1d-v1  Hsa-Mir-29-P1d-v2  Lch-Mir-29-P1d  Loc-Mir-29-P1d  Mal-Mir-29-P1d1  Mdo-Mir-29-P1d-v1  Mdo-Mir-29-P1d-v2  Mml-Mir-29-P1d-v1  Mml-Mir-29-P1d-v2  Mmu-Mir-29-P1d-v1  Mmu-Mir-29-P1d-v2  Mun-Mir-29-P1d-v1  Mun-Mir-29-P1d-v2  Npo-Mir-29-P1  Oan-Mir-29-P1d-v1  Oan-Mir-29-P1d-v2  Obi-Mir-29-P1  Ocu-Mir-29-P1d-v1  Ocu-Mir-29-P1d-v2  Ovu-Mir-29-P1  Pbv-Mir-29-P1d-v1  Pbv-Mir-29-P1d-v2  Pfl-Mir-29-P1  Pmi-Mir-29-P1  Sha-Mir-29-P1d-v1  Sha-Mir-29-P1d-v2  Sko-Mir-29-P1  Spt-Mir-29-P1d  Spu-Mir-29-P1  Sto-Mir-29-P1d  Tca-Mir-29-P1  Tgu-Mir-29-P1d-v1  Tgu-Mir-29-P1d-v2  Tni-Mir-29-P1d1  Xbo-Mir-29-P1  Xtr-Mir-29-P1d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_179: 149124-149183 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P1d1)		 Mir-29-P1d1 GeneScaffold_179: 149124-149183 [+] UCSC Ensembl
Mir-29-P2d1 GeneScaffold_179: 149525-149583 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGAUCCAGAACACGUCCUGCCCAGGGAACCGGUUUCAGGUGGUGUUUUAGAGUACCAGAUCCAAUCUAGCACCAUUUGAAAUCGGUGUUCCUGAGCUGGAAACCCCGUCGCUAGUGGA
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Structure
        10          20         30        40        50          
ACAGAUCCAGAACACGU--  U  C      -|                 UU    GUACCA 
                   CC GC CAGGGA ACCGGUUUCAGGUGGUGU  UAGA      \
                   GG CG GUCCUU UGGCUAAAGUUUACCACG  AUCU      G
AGGUGAUCGCUGCCCCAAA  U  A      G^                 --    AACCUA 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-29-P1d1_5p*
mirBase accessionMIMAT0044149
Sequence 
0- CCGGUUUCAGGUGGUGUUUUAGA -23
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Mature sequence

Gmo-Mir-29-P1d1_3p
mirBase accessionMIMAT0044150
Sequence 
38- UAGCACCAUUUGAAAUCGGUGU -60
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