MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-29-P2b1

Family name MIR-29 (all species)
Seed AGCACCA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-29a-2
Paralogues Gmo-Mir-29-P1b1  Gmo-Mir-29-P1b2  Gmo-Mir-29-P1d1  Gmo-Mir-29-P1d2  Gmo-Mir-29-P2d1  Gmo-Mir-29-P2d2 
Orthologues Aca-Mir-29-P2b  Ami-Mir-29-P2b  Asu-Mir-29-P2  Bfl-Mir-29-P2  Bla-Mir-29-P2  Bta-Mir-29-P2b  Cbr-Mir-29-P2  Cel-Mir-29-P2  Cfa-Mir-29-P2b  Cgi-Mir-29-P2  Cin-Mir-29-P2  Cli-Mir-29-P2b  Cmi-Mir-29-P2b  Cpi-Mir-29-P2b  Cpo-Mir-29-P2b  Csc-Mir-29-P2  Cte-Mir-29-P2  Dno-Mir-29-P2b  Dre-Mir-29-P2b1  Esc-Mir-29-P2  Ete-Mir-29-P2b  Gga-Mir-29-P2b  Gja-Mir-29-P2b  Hsa-Mir-29-P2b  Isc-Mir-29-P2  Lch-Mir-29-P2b  Lgi-Mir-29-P2  Loc-Mir-29-P2b  Mal-Mir-29-P2b1-v1  Mal-Mir-29-P2b1-v2  Mdo-Mir-29-P2b  Mml-Mir-29-P2b  Mmu-Mir-29-P2b  Mun-Mir-29-P2b  Npo-Mir-29-P2  Oan-Mir-29-P2b  Obi-Mir-29-P2  Ocu-Mir-29-P2b  Ovu-Mir-29-P2  Pbv-Mir-29-P2b  Pfl-Mir-29-P2  Pmi-Mir-29-P2  Rno-Mir-29-P2b  Sha-Mir-29-P2b  Sko-Mir-29-P2  Spt-Mir-29-P2b  Spu-Mir-29-P2  Sto-Mir-29-P2b  Tgu-Mir-29-P2b  Tni-Mir-29-P2b1  Xbo-Mir-29-P2  Xtr-Mir-29-P2b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig73237: 1317-1376 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-29-P2b1)
Mir-29-P1b1 contig73237: 1119-1180 [+] UCSC Ensembl
Mir-29-P2b1 contig73237: 1317-1376 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUACGCUAUAUUUUUCCCCACUCACAGAUGACUGGUUUCCUCUGGUGCAUAGAGUAAGUCUAGCCUUCUAGCACCAUUUGAAAUCGGUUAUGACACUGGGGAACGUUGCAUCUGCGUCGG
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Structure
        10        20            30        40        50          
GUACGCUAUAUUUUUCCCCA   A   ----|           CUC      A    GUAAGU 
                    CUC CAG    AUGACUGGUUUC   UGGUGC UAGA      \
                    GGG GUC    UAUUGGCUAAAG   ACCACG AUCU      C
GGCUGCGUCUACGUUGCAA-   -   ACAG^           UUU      -    UCCGAU 
.       110        100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-29-P2b1_5p*

mirBase accessionMIMAT0044072
Sequence
0- ACUGGUUUCCUCUGGUGCAUAGA -23
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Mature sequence

Gmo-Mir-29-P2b1_3p

mirBase accessionMIMAT0044073
Sequence
38- UAGCACCAUUUGAAAUCGGUUA -60
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