Mir-29-P2b1

MirGeneDB ID

Gmo-Mir-29-P2b1

Family name

MIR-29 (all species)

Seed

AGCACCA

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-29a-2

Paralogues

Gmo-Mir-29-P1b1 Gmo-Mir-29-P1b2 Gmo-Mir-29-P1d1 Gmo-Mir-29-P1d2 Gmo-Mir-29-P2d1 Gmo-Mir-29-P2d2

Orthologues

Aca-Mir-29-P2b Agr-Mir-29-P2 Ami-Mir-29-P2b Asu-Mir-29-P2 Bfl-Mir-29-P2 Bla-Mir-29-P2 Bta-Mir-29-P2b Cbr-Mir-29-P2 Cel-Mir-29-P2 Cfa-Mir-29-P2b Cja-Mir-29-P2b Cli-Mir-29-P2b Cmi-Mir-29-P2b Cpi-Mir-29-P2b Cpo-Mir-29-P2b Cte-Mir-29-P2 Dgr-Mir-29-P2 Dma-Mir-29-P2 Dno-Mir-29-P2b Dpu-Mir-29-P2 Dre-Mir-29-P2b1 Eba-Mir-29-P2 Eca-Mir-29-P2b-v1 Eca-Mir-29-P2b-v2 Esc-Mir-29-P2 Ete-Mir-29-P2b Gga-Mir-29-P2b Gja-Mir-29-P2b Gsp-Mir-29 Hru-Mir-29-P2 Hsa-Mir-29-P2b Laf-Mir-29-P2b Lch-Mir-29-P2b Lgi-Mir-29-P2 Lhy-Mir-29-P2 Llo-Mir-29-P2 Loc-Mir-29-P2b Mal-Mir-29-P2b1-v1 Mal-Mir-29-P2b1-v2 Mdo-Mir-29-P2b Mgi-Mir-29-P2 Mml-Mir-29-P2b Mmr-Mir-29-P2b-v1 Mmr-Mir-29-P2b-v2 Mmu-Mir-29-P2b Mom-Mir-29-P2 Mun-Mir-29-P2b Neu-Mir-29-P2b Npo-Mir-29-P2 Oan-Mir-29-P2b Obi-Mir-29-P2 Ocu-Mir-29-P2b Ofu-Mir-29-P2 Ovu-Mir-29-P2 Pab-Mir-29-P2b Pau-Mir-29-P2 Pbv-Mir-29-P2b Pcr-Mir-29-P2 Pdu-Mir-29-P2 Pfl-Mir-29-P2 Pmi-Mir-29-P2 Pve-Mir-29-P2 Rno-Mir-29-P2b Rph-Mir-29-P2 Sha-Mir-29-P2b Sko-Mir-29-P2 Sme-Mir-29-o2 Spt-Mir-29-P2b Spu-Mir-29-P2 Sto-Mir-29-P2b Tgu-Mir-29-P2b Tni-Mir-29-P2b1 War-Mir-29-P2 Xbo-Mir-29-P2 Xtr-Mir-29-P2b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

contig73237: 1317-1376 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-29-P2b1)

Mir-29-P1b1 contig73237: 1119-1180 [+] UCSC Ensembl
Mir-29-P2b1 contig73237: 1317-1376 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUACGCUAUAUUUUUCCCCACUCACAGAUGACUGGUUUCCUCUGGUGCAUAGAGUAAGUCUAGCCUUCUAGCACCAUUUGAAAUCGGUUAUGACACUGGGGAACGUUGCAUCUGCGUCGG

Get precursor sequence

Structure

        10        20            30        40        50          
GUACGCUAUAUUUUUCCCCA   A   ----|           CUC      A    GUAAGU 
                    CUC CAG    AUGACUGGUUUC   UGGUGC UAGA      \
                    GGG GUC    UAUUGGCUAAAG   ACCACG AUCU      C
GGCUGCGUCUACGUUGCAA-   -   ACAG^           UUU      -    UCCGAU 
.       110        100         90        80         70